BAC Information

Click to search

BAC

Clone NameMSMg01-058K21
Chromosome18 (Build37)
Map Location 78,486,746 - 78,486,951
singlet/doubletsinglet
Overlap geneSlc14a2
Upstream geneSt8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1
Downstream geneEG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058K21.T7 (MSMg01no058_k21.b1)MSMg01-058K21.TJ (MSMg01no058_k21.g1)
ACCAG285537AG285538
length718725
length of high quality
(start - end)
444 (63 - 506)206 (89 - 294)
definitionCHROMAT_FILE: MSMg01no058_k21.b1 PHD_FILE: MSMg01no058_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:59 2005CHROMAT_FILE: MSMg01no058_k21.g1 PHD_FILE: MSMg01no058_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGTCGCTAAACGACTCCTATAGTGCGTGACTCGGCGGAATTCTTTGTT
CAGTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTTCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTCGCAGAAACTTTGGAGTTTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCTCTTATCTTCGAGGCTATTTCCCACTTTCTCCTCTAT
AAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATT
TGACCTTAGTACAAGGAGATAAGTGTGGATCGATTCGCATTCTTCTACAT
GATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTT
CCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCATGTGACCTTATGTGT
GTGGGTTCATTTCTGGGCCTTCTATTCTATTTCCATTGCGTTTCTTGTCC
ATCTCTATTCCAGGACCATGTTGTTCCTATCACATTTGTTTCTGTAGCAC
ATTTTTTCATTCATGCCTGGCCGCACCCTCCAGATGTTCTCTGATCCCCC
CCCATCATTATTTGTCTT
NAACGATGCAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTCCGCAATCAGTACCACAGTCAGGAGCAAAAATC
TAAATATGTGAAAATACTTCTTGAGCACTCCTACAAGACACTGAGCACAA
TGCATAACAAATAGGTCAGCTGTGTTTCAGAGTCCTTGGAACCATCACGG
GTGACATAAGCATATTTTTTACCACCATTATTTAATAAAAGCTTTCTTGT
GTGCTGAGGCCAAGGGCTTTGGCACATACGCAGTACAAGTCATTCCACTT
AACAGCCACTGATTAAGAGAAACGAATCCTAGGAACATCTAGGCTGTAGA
TCTCTAAGGATTTTGGAAGCAAGAGAACAAAGGACATTGTTCAAGAAACA
TGGATTATATCAATAGCGCTGCAGCCATGCATTTTACACTCATTCCAGTT
CATCCTTCCTAGGAGAGGAAGACAAGGAAACGACATCAGTGCGGGTCTTA
TACAGTCCTTATTTAATTTGCTTGCTTTTGTAATTGACTGCAACACATTT
GAGCATGGAATCCACTACGCTCTGTGATCTTGGTATTATCAACTTTCATT
CATTCATTTATTTATTCATTTATTCATTTATTCATTCACCAACTGCGTTG
TCCCGCACCAGTAAGGCGGCAATGGTTGCATTGCAACATACAAAACCATA
AAGGATGGACCCCACCTTACTAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_k21.g1 MSMg01no058_k21.g1 CHROMAT_FILE:
MSMg01no058_k21.g1 PHD_FILE: MSMg01no058_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:59 2005
         (206 letters)



>mm_chr18_78486546_78487151
          Length = 606

 Score =  383 bits (198), Expect = e-111
 Identities = 204/206 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagcaaaaatctaaatatgtgaaaatacttcttgagcactcctacaagacactgagcac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 ggagcaaaaatctaaatatgtgaaaatacttcttgagcagtcctacaagacactgagcac 260

                                                                       
Query: 61  aatgcataacaaataggtcagctgtgtttcagagtccttggaaccatcacgggtgacata 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgcataacaaataggtcagttgtgtttcagagtccttggaaccatcacgggtgacata 320

                                                                       
Query: 121 agcatattttttaccaccattatttaataaaagctttcttgtgtgctgaggccaagggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcatattttttaccaccattatttaataaaagctttcttgtgtgctgaggccaagggct 380

                                     
Query: 181 ttggcacatacgcagtacaagtcatt 206
           ||||||||||||||||||||||||||
Sbjct: 381 ttggcacatacgcagtacaagtcatt 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)