Query= MSMg01no059_p23.b1 MSMg01no059_p23.b1 CHROMAT_FILE:
MSMg01no059_p23.b1 PHD_FILE: MSMg01no059_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:38 2005
(637 letters)
>mm_chr18_30260851_30261887
Length = 1037
Score = 1147 bits (593), Expect = 0.0
Identities = 624/635 (98%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 3 ggaattcaacaaggattacacccttaactcatttatttttaattttggggacagatttac 62
|||||||| |||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 203 ggaattcaccaaggaataaacccttaactcatttatttttaatttgggggacagatttac 262
Query: 63 agatttggttagtaaatccagcaaggtcttagatgaattataatttgaatgtaaatactt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agatttggttagtaaatccagcaaggtcttagatgaattataatttgaatgtaaatactt 322
Query: 123 taaggaaaatagagaatagctaattagctccagcatataataattttttccttgttaaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 taaggaaaatagagaatagctaattagctccagcatataataattttttccttgttaaca 382
Query: 183 cagttggcttgaaatgcattgttttaattcagtttctgaatacctaaattattctgtgct 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagttggcttgaaatgcattgttttaattcagtttctgaatacctaaattattctgtgct 442
Query: 243 ctttgaagattaaagtacttcaagaaattactaaatttcattgtatttaatttaattttt 302
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctctgaagattaaagtacttcaagaaattactaaatttcattgtatttaatttaattttt 502
Query: 303 gagacatcaaataatagttcacagccatgatttttaaacatcaatattttaaggctgtga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gagacatcaaataatagttcacagccatgatttttaaacatcaatattttaaggctgtga 562
Query: 363 atttatttgtgaattactcatatttcttgttgctatgggaaaaaagggaaaatatcagac 422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atgtatttgtgaattactcatatttcttgttgctatgggaaaaaagggaaaatatcagac 622
Query: 423 aagaacaactgaaagcagggggagttcattttggcttacagtttgagggtacctaagtcc 482
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 623 aagaacaactgaaagcagggggagttcattttggctcacagtttgagggtacc--agtcc 680
Query: 483 agtgtgttggggaataatggaagcagcggctgatgaggctagtctcactgcatctgcgat 542
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgtgtaggggaataatggaagcagcggctgatgaggctagtctcactgcatctgcgat 740
Query: 543 caggacgaagagaagttagtgtaaccactcaactactttcctcctttctctctttttcat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggacgaagagaagttagtgtaaccactcaactactttcctcctttctctctttttcat 800
Query: 603 tttcttcaggactccaatctctgggaggatactgc 637
||||| |||||||||||||||||||||||||||||
Sbjct: 801 tttctccaggactccaatctctgggaggatactgc 835
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_p23.g1 MSMg01no059_p23.g1 CHROMAT_FILE:
MSMg01no059_p23.g1 PHD_FILE: MSMg01no059_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:38 2005
(611 letters)
>mm_chr18_30381098_30382108
Length = 1011
Score = 1151 bits (595), Expect = 0.0
Identities = 607/611 (99%)
Strand = Plus / Minus
Query: 1 tttctgcatcatggaaccaagaacattttggcttaaaatgatgaaggtcttaataataat 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 811 tttctgcatcatggaaccaagaacattttggcttaaaatgatgaaggtctgaataataat 752
Query: 61 taatgccatgcaagaatattagaatgggctacttagcaaattagagatgcacataacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 taatgccatgcaagaatattagaatgggctacttagcaaattagagatgcacataacttt 692
Query: 121 aagtacttgtcctaatgtcaggcctgccataaagggaatttcctgaatacatgagatggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aagtacttgtcctaatgtcaggcctgccataaagggaatttcctgaatacatgagatggt 632
Query: 181 gcctaaaatgttttccttttctaaatgaactattttaattttcaacatttctgagaagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gcctaaaatgttttccttttctaaatgaactattttaattttcaacatttctgagaagac 572
Query: 241 atatggattttttcaacacaatttcccagtgttctggacaccaactattacaatactatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atatggattttttcaacacaatttcccagtgttctggacaccaactattacaatactatg 512
Query: 301 cagttgtaattgttcagttttgacacccgcagcactggtatatggcctataggttaaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cagttgtaattgttcagttttgacacccgcagcactggtatatggcctataggttaaaac 452
Query: 361 cttctatcacacaagactgtcaaatagatcacctgccatctcagaagatcagaagatcaa 420
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 451 cttctatcacacaagactgtcaaataggtcacctgccatctcagaagatcagaagatcaa 392
Query: 421 tgggctatctcctgatttcccctgaccatctcatatagctgtactactgtatgagtatac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgggctatctcctgatttcccctgaccatctcatatagctgtactactgtatgagtatac 332
Query: 481 ttcatggtactcaggaaaacattattcaaagtatcattgctctgttataaagaattcaac 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctcatggtactcaggaaaacattattcaaagtatcattgctctgttataaagaattcaac 272
Query: 541 tcaaaagagccaacagaagggatgtatatagtgaagtatgtgggaaaaccacagaaattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 271 tcaaaagagccaacagaagggatgtatatagtgaagtatgtgggaaaaccacagaaaatt 212
Query: 601 ctatactcttt 611
|||||||||||
Sbjct: 211 ctatactcttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
