BAC Information

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BAC

Clone NameMSMg01-060A13
Chromosome18 (Build37)
Map Location 56,225,101 - 56,225,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043089, LOC667401, LOC667409, LOC629043, LOC100043099, LOC629057
Downstream geneLOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060A13.T7 (MSMg01no060_a13.b1)MSMg01-060A13.TJ (MSMg01no060_a13.g1)
ACCAG286573AG286574
length702704
length of high quality
(start - end)
365 (45 - 409)334 (73 - 406)
definitionCHROMAT_FILE: MSMg01no060_a13.b1 PHD_FILE: MSMg01no060_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:41 2005CHROMAT_FILE: MSMg01no060_a13.g1 PHD_FILE: MSMg01no060_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTCTCCTAGTGGTTGTCTTATCTTCTTTCTTTTATAAGACATCT
TGGTCAATTTATTTAAAAAAAGAGTTTAATTTGGGTTACTATTCCAGAGG
GTCAGAGTATATGATGGAGTGAAGGTATGACTGGAACAGTAGCTGAGAGA
GAGAATACATCTGATCTACAGGTAGGTGGCAGAGAGCACACTGGCAATGC
AAGAGATTTTTATAACTCAAAGCCCACCCCCAGGGACACAACTCCTAATC
CTTCCCAAATAGTTCCTCATAACATACAGTGTAGTTGGAAAAGAGGAATT
GGGGCATAAGAGGAAATACTCTAGGAAAGCAAAATCAAAACCTAGAAGGT
GAACTCTATTTCCCCCACCTTCAAGTCTGATGACAGAGGGCTTATTTGAC
TCAGCCCATCCAGCTTTGCTGCCTGTAGGATACTATTTCTCTTGGGCTGG
CTCCACTCCCTGTCTGTAGTTCTCTTTGTCAGCTATCTCATTGCTCTGGA
ATTGCCCACATCTTGTGCTCTCCAGCTCAACTCAGGCTTCACTGTCACAG
TTTCACACTATGGCCTCTTTGGTCCTTTCCACAGAGACACCTCTGATGCT
CACCTGTTTTCAGTGGTGTTTTTTATCCTTGCAAGGAAAGCCTAGTAACC
TG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGAGACAGATGCATACCTTTACCTAAG
AAACAAATTATTTAATAAGCAAACAACAAATAAAAATGTCAGAACCCTAG
AATGGGAAAATTAATCAATAGCATTGCCTGCTCACTAGGATGAAGGCAGT
CATTAGCTAGCATGTAGATAAAGATCAGGGAACCAACCTACCTCTGTGAT
ATAGCGATCATGCCATTGAGAGACAGTCTCCTACTATAGCTAGTGAGCAT
GATGGCAAGATAAAAAGAAAGGCTTAGGACAAGAAAGTGGCCACAGTATT
TCGGCTAATGTCATCCTCAGTGGGTCCTGAGAATCCCTCACTTCCCTGGA
GTCCGCCCACCTTCTAGTGGCTAGCCCCAGATCCTCAAAACTGCCCCTCC
ACAGACTCACACATACTGCTAAAAAGGTAGCACGTGTTAATTCAAATGAC
CTATAGAGACCACCTCCAGTAGATAGGCATGGCCTCCAGTTGAGGGATGG
AGCCACCCTCACATCTCAAAAATTTTAATCGAGAATTGGCCCTGTCTAAA
AGAAATGCTGGGACATTAGATAGAGCAGAGACTAAAGTAAAGGCCATCCA
TAGACTGTCCCACCTAGGGATCCATTTCATCTGCAGACTCCTTAACCCAG
ACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_a13.g1 MSMg01no060_a13.g1 CHROMAT_FILE:
MSMg01no060_a13.g1 PHD_FILE: MSMg01no060_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:41 2005
         (334 letters)



>mm_chr18_56224901_56225634
          Length = 734

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagacagatgcatacctttacctaagaaacaaattatttaataagcaaacaacaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggagacagatgcatacctttacctaagaaacaaattatttaataagcaaacaacaaata 260

                                                                       
Query: 61  aaaatgtcagaaccctagaatgggaaaattaatcaatagcattgcctgctcactaggatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgtcagaaccctagaatgggaaaattaatcaatagcattgcctgctcactaggatg 320

                                                                       
Query: 121 aaggcagtcattagctagcatgtagataaagatcagggaaccaacctacctctgtgatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggcagtcattagctagcatgtagataaagatcagggaaccaacctacctctgtgatat 380

                                                                       
Query: 181 agcgatcatgccattgagagacagtctcctactatagctagtgagcatgatggcaagata 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 agcgatcatgccattgagagacagtctcctactatagctagtgagcatgatggcaagaaa 440

                                                                       
Query: 241 aaaagaaaggcttaggacaagaaagtggccacagtatttcggctaatgtcatcctcagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagaaaggcttaggacaagaaagtggccacagtatttcggctaatgtcatcctcagtg 500

                                          
Query: 301 ggtcctgagaatccctcacttccctggagtc 331
           |||||||||||||||||||||||||||||||
Sbjct: 501 ggtcctgagaatccctcacttccctggagtc 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)