BAC Information

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BAC

Clone NameMSMg01-060D24
Chromosome18 (Build37)
Map Location 65,260,597 - 65,261,170
singlet/doubletsinglet
Overlap geneNedd4l
Upstream geneLOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060D24.T7 (MSMg01no060_d24.b1)MSMg01-060D24.TJ (MSMg01no060_d24.g1)
ACCAG286737AG286738
length738683
length of high quality
(start - end)
199 (92 - 290)575 (74 - 648)
definitionCHROMAT_FILE: MSMg01no060_d24.b1 PHD_FILE: MSMg01no060_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:56 2005CHROMAT_FILE: MSMg01no060_d24.g1 PHD_FILE: MSMg01no060_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:02:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCGCCNNNAATCTATAATTGCGGCGCTAAACGAATACCAAGGTTCAG
CACCCCGCGGAANCCANNGCCCTTAGCAGCATCGCGCATANCCTTCTCGG
AAAATCCTCTAACCCAGCATTTCTTATTTTGGGGGTCATTTGACCTCTAC
CCCCATTCCCCTCCATAGAGGTCACCATAAGTAAATAACAATTTGTAACA
GTAGCAAAATTACAGTTATGAAGTAGCAACAAAACTAATTTTATGGTGGG
GGGGGTCACCTTTACACGAGAAAATGTACTAAAGGGTTGTAGCATTGCGA
AGGTTGAGAACAGNTGCTCTAACACTATTTTTTTCTCTNAAAGGCGGGCC
CCCCAAAAAAAAGGCCGGGGTTTATTTTAGCCCCCCCCCAAGAGAGGCAG
ATTTGACTAACCTTTCCCTTTCTTCCCCGGACTGGGAGAAAAAATCCCCT
CCCCCCACCTCTTTTAAGAAGCGCCCNCCCTCCCCCCCGTCAAAANNNNN
NNNAAAAACCAGAGGANNTNNCGCTGGCCTTNNTCAAATGTGATTGGAAA
CAGGGTCGCTTAGGGGGCCGCGGGGGTTAGGAGGCGGACCCCTTTCCGGG
CGGAGCGGGGGTGGCCCTATAGGGGAAGGGGATATTTTTGTGTGGCAATC
TCGGCATAGGGNNNNNNNTTGGTGTTTTTTTCTCTCTTCGCCACGGCGAG
GGGGGCGACAAAAACGTGCACAATAGTCATCCCTTTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGTAATCCTGGTATATGAGAGGTAGG
GGCTAGAGAATGAGATGTTCAGAGTCATTCTTGGCTACATTAAAAGTTTT
GAGGGAGCTTGGGGTACCACATGATGCTGTCTCGTAAGGAGCTGAAGACA
GCATAGATGAGCAAAGACATCACGCTTTGCTCACCCTTCTCTATCTAGAA
GTGGGGTGAATTCTACCGGGCTAAGCTGATTCCATCTGTTGGCTTATCCT
GTACCTTCTGGTTCTTGCCTTTTCAAATGCTTGCTTTTGTGGAGCCAGCC
ACTGTGGAGGCAAGCTCGAGTTAGTTATTTAGACAGTTCCAGAAGTTGGA
GAAAAAGGCTCTGTGGTGAAGAGCGCTTGCTCATCTCCCGGTGGGGGGAG
CTGAATTTAGTTCCTAGTAGTGTCAGGCACTTCACAACTGCTTGTAACTC
CAGCTGTAGGGCATCGGACACTACCTCTGGCCTCTGTGGGCATCCATGTT
GCACATAAATAAGAGATACACATTTTAAAAGAGAGAAATTCCAGCCTCCT
AGCCATCCCTTACCTGTGACAGATTGGGGAAGGGATCCGAGCGACCACGG
TTGAGCCCATACTGGCTGACAGTGGATGAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_d24.g1 MSMg01no060_d24.g1 CHROMAT_FILE:
MSMg01no060_d24.g1 PHD_FILE: MSMg01no060_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:56 2005
         (575 letters)



>mm_chr18_65260397_65261371
          Length = 975

 Score = 1079 bits (558), Expect = 0.0
 Identities = 570/574 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtaatcctggtatatgagaggtaggggctagagaatgagatgttcagagtcattcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtaatcctggtatatgagaggtaggggctagagaatgagatgttcagagtcattcttg 260

                                                                       
Query: 61  gctacattaaaagttttgagggagcttggggtaccacatgatgctgtctcgtaaggagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gctacattaaaagttttgagggagcttggggtaccacatgatgctgtcttgtaaggagct 320

                                                                       
Query: 121 gaagacagcatagatgagcaaagacatcacgctttgctcacccttctctatctagaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagacagcatagatgagcaaagacatcacgctttgctcacccttctctatctagaagtg 380

                                                                       
Query: 181 gggtgaattctaccgggctaagctgattccatctgttggcttatcctgtaccttctggtt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 gggtgaattctaccgggctaagctgattccatctgttagcttatcctgtaccttctggtt 440

                                                                       
Query: 241 cttgccttttcaaatgcttgcttttgtggagccagccactgtggaggcaagctcgagtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgccttttcaaatgcttgcttttgtggagccagccactgtggaggcaagctcgagtta 500

                                                                       
Query: 301 gttatttagacagttccagaagttggagaaaaaggctctgtggtgaagagcgcttgctca 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttatttagacagttccagaagctggagaaaaaggctctgtggtgaagagcgcttgctca 560

                                                                       
Query: 361 tctcccggtggggggagctgaatttagttcctagtagtgtcaggcacttcacaactgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcccggtggggggagctgaatttagttcctagtagtgtcaggcacttcacaactgctt 620

                                                                       
Query: 421 gtaactccagctgtagggcatcggacactacctctggcctctgtgggcatccatgttgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 gtaactccagctgtagggcatcggacactacctctggcctctgtgggcatccatgctgca 680

                                                                       
Query: 481 cataaataagagatacacattttaaaagagagaaattccagcctcctagccatcccttac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cataaataagagatacacattttaaaagagagaaattccagcctcctagccatcccttac 740

                                             
Query: 541 ctgtgacagattggggaagggatccgagcgacca 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtgacagattggggaagggatccgagcgacca 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)