Query= MSMg01no060_f21.b1 MSMg01no060_f21.b1 CHROMAT_FILE:
MSMg01no060_f21.b1 PHD_FILE: MSMg01no060_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:05 2005
(587 letters)
>mm_chr18_51643481_51644467
Length = 987
Score = 1025 bits (530), Expect = 0.0
Identities = 566/578 (97%), Gaps = 2/578 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaatccatgccgcacaatgtggga-gaacatgacagagaccaacattccttcat 63
||||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 205 gaattcaaatccaggcagcacaatgtgggaggaacatgacagagaccagcattccttcat 264
Query: 64 gctctgtagtgatgggcagaaaaggatgcccacagacctgcctctgccccatagcacaaa 123
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 gctctgtagtgacgggcagaaaaggaagcccacagacctgcctctgccccatagcacaaa 324
Query: 124 taggccttagatacacagagctcagcctatactacacagcagagaatgggaggaggaaga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggccttagatacacagagctcagcctatactacacagcagagaatgggaggaggaaga 384
Query: 184 cagacagagacctgcacattgccatgcaactcccaacagtcttcccttccagtgcacagc 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagacaaagacctgcacattgccatgcaactcccaacagtcttcccttccagtgcacagc 444
Query: 244 ataggcaggccattagacacctgcatctcagaagatgttgtccaccagctgcctgaccat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataggcaggccattagacacctgcatctcagaagatgttgtccaccagctgcctgaccat 504
Query: 304 tgggaaccacatgggcaaagaggtgatgccgtattctttgccacctccagtagccaggaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgggaaccacatgggcaaagaggtgatgccgtattctttgccacctccagtagccaggaa 564
Query: 364 agctgtccaccacgcttttaagcacaagagagctacccactggatcatgatcatgggaga 423
| |||||||| | |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 565 atctgtccacaa-gcttttgagcacaagagagttacccactggatcatgatcatgggaga 623
Query: 424 gctagttctgcccctcaccagctatagcactctggggagcaggccttgcacctagcctgg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gctagttctgcccctcaccagctatagcactctggggagcaggccttgcacctagcctgg 683
Query: 484 acagcacagcaaagctgaccctggtggtaggggcacaggtattctggccccaaagatgaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acagcacagcaaagctgaccctggtggtaggggcacaggtattctggccccaaagatgaa 743
Query: 544 ctgaccttgccacttgacatttatccaccatgatgtgg 581
||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgaccttgccacttgacatttatccaccatgatgtgg 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_f21.g1 MSMg01no060_f21.g1 CHROMAT_FILE:
MSMg01no060_f21.g1 PHD_FILE: MSMg01no060_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:05 2005
(637 letters)
>mm_chr18_51774869_51775905
Length = 1037
Score = 1131 bits (585), Expect = 0.0
Identities = 624/637 (97%)
Strand = Plus / Minus
Query: 1 ttgattttatttacactagttaagatctgtattcattgaaaagtgtcttctcaattacat 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ttgattttatttacgctagttaagatctgtattcattgaaaagtgtcttctcaattacat 778
Query: 61 aagcatgaaaatctcccttcatggtgcctatcattcaatgcttctgtaaaattccttatt 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aagcatgaaaatctcccttcctggtgcctatcattcaatgcttctgtaaaattccttatt 718
Query: 121 tgagtgacattgcacacatttattaatcaatgactggtatatctcacctagcatattcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tgagtgacattgcacacatttattaatcaatgactggtatatctcacctagcatattcac 658
Query: 181 tcgttttatcttattcaaaatcaccctcatggcattgacatgaacaatgcattttgcata 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 657 tcgttttatcttattcaaaatcaccctcatggcattgacatgaacaatgaattttgcata 598
Query: 241 tgagctctaccacataaacaatttaaggacaaaagtacagatatggttatcatacattga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tgagctctaccacataaacaatttaaggacaaaagtacagatatggttatcatacattga 538
Query: 301 aaagtttttacactaagatatggtggcatctcactgaaaccccactatctggagattgtg 360
||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 537 aaagtttttacactaagatatggtggcatctcactgaaatctcagtatctggagattgtc 478
Query: 361 gtaaaaggatcatgaattccagcctagttagagttataaaccaagacttcatctaaaaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gtaaaaggatcatgaattccagcctagttagagttataaaccaagacttcatctaaaaat 418
Query: 421 tcaatttaaaaatttgataaattatctgcacaacagacaaagctgaaggtgaggaggcaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 417 tcaatttaaaaatttgataaattatctgcacaacagacaaagctgaaggtgaggagacaa 358
Query: 481 gcttcagttgaggaagaaagcacttatagatagacaggatatatgataggataatattga 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gcttcagctgaggaagaaagcacttatagatagacaggatatatgataggataatattga 298
Query: 541 aaacataaagatgtcaataaccaggagtacggggaaatgatgcaatgaagagaaatggga 600
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct: 297 aaacataaagatgtcaataaccaggggcagggggaaatgatgcaatgaagagaaatggga 238
Query: 601 aatgtatgttctatatttggcttcatttctctctgcc 637
|||||||||||||||||||||||| ||||||||||||
Sbjct: 237 aatgtatgttctatatttggcttcctttctctctgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
