BAC Information

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BAC

Clone NameMSMg01-061H05
Chromosome18 (Build37)
Map Location 87,544,937 - 87,545,075
singlet/doubletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-061H05.T7 (MSMg01no061_h05.b1)MSMg01-061H05.TJ (MSMg01no061_h05.g1)
ACCAG287657AG287658
length946815
length of high quality
(start - end)
---139 (69 - 207)
definitionCHROMAT_FILE: MSMg01no061_h05.b1 PHD_FILE: MSMg01no061_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:25 2005CHROMAT_FILE: MSMg01no061_h05.g1 PHD_FILE: MSMg01no061_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:04:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCCGCGCGCCGGCTCTTTCCTTATAGGTGGTAGNAGACAAGCGCGCC
CGGGGCGGGGGGGCCCCCCATCCTCCCCTCNCCTCTAATAATTTGCGGGC
CGTNTAATACGAACCCACTATTTGGGAGAGGGGGGTGCGGGAATTNCTCC
TAATTATACCAGAGGAGCAGACCGATATTACATATTATATTATATATAAG
ATTAAGAGAGAGGAGAGCTCTCCGGAACACGTGCGGATTGGGTCGTATCC
CTTCTAACCGGAATAGGGGCGGGGAATTTTTCTTAAAATAAATGGGGGGA
AAGGTGCTGGGAACAAACTTTAAAATTGGGGATGGTGACCACGGAAATTC
CGCGGCCTCCGGGTAAAGGGAACAAAGACGAAAAAAAAAAGGGTGGGGGG
GGGGGACGTTCTTCTGGCAGACGAGGGACAGGGAAAGAGGTGGTGTGCGA
TTGGGGGGGGCGCGTGTTGTGGGGGAGGAAACCCAAGTGGGGGGTGGGCA
AGAAGAAACGGGGGTGAGGCGGCGGTGGGATATCAACGAGGGGGGGGTGT
GGGGCGCACGCTGGGGGCGGGGGGGCGTTATTTTGTCGTGGTGGTGGTGC
GGGGCACCCACAATATACTTCTCCATTTATTTCTCACGCGTTTCCGCCCC
GTAGTAGGAGCGCGGACAAGCCGGGTNATGGCGGGAGGGCGCGCCGCCGC
TTGGGTGGTTATATGGGGCGTCACACACCCCGCCGGGTGCGGGGGGGCGG
TGATACCCGTCTCTTCCAGGCAATAGGGAGGTTGGAGGGCGCCATATGCC
GGGCGGAGTGGGGGCTGACGCTGTCGAGAGCCGGCCAACCAACTCCCGGG
TTGGTGGTGGGTGGGCAGGTATAAATGGGGCGCGAAGTCCCGCCGCACAT
ATTAACGGGCGGCGGGGATACCCAGCCGCGCTAGTGGGAAACGTGG
CAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGAAATTTATTTTTGTATATTCAGCTATAAGGACA
ATATGGAGATATCTTTAATACTTATTTTTTAAAAATGGGTTACTAATGAG
TAATTATAATTGCAGAAAGCTGTAGATTTGTGAAAAGAATTCCAGGTCCA
TACGTACGCCAACAGTGTCTGACGACAGTTTTCCTATTATTTGTCTGCTC
ATCATCTAAAACGATTACCTTCTGTTAGGTTGAAAAATAAATAATCACAT
CCTACAAAGATTTTTACTTTTACCTCACATTTGTTTTCCAGTCCTATTAC
CTACTTATAGTAAATGTCATTGTTTATACCAACTGCCTTCACATTGCTCT
CACAAAGTAAACTCAATTATATGCTTTTTGAGGATCCTTGACCTTATACA
GCCTCTGCTCTACCCTTATTGAACACTTTTTTTTTCTCCTGATACATTAA
ATTTCTCTGTCTTATCCAGGGTTGTCCTTGTAACTTACTTCTCGAAAAAC
CTTGTATGTACTTCTAATTACTAAAAATTAAACCGTGCTCTATTACTTCT
CCAAGACGCTCTCGATATTATAAAGTTAAGTTGCTTACCACATGAAATAG
TTCCATTATACCACCCTTTCTCCTACCCCTTTTATTACATTTTTATGGTA
TTCGCTTTTCAGTTGATACTACTTATTTAAATAGACCTCTTTTATTTTTT
TGCTTATATATTACTATATTATTACATTTCACTCAACCTAACTAATCCAC
ACAATTAATATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no061_h05.g1 MSMg01no061_h05.g1 CHROMAT_FILE:
MSMg01no061_h05.g1 PHD_FILE: MSMg01no061_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:26 2005
         (139 letters)



>mm_chr18_87544737_87545276
          Length = 540

 Score =  230 bits (119), Expect = 2e-65
 Identities = 134/139 (96%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttatttttgtatattcagctataaggac-aatatggagatatctttaatacttattt 59
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 339 aatttatttttgtatattcagctataaggacaaatatggaaatatctttaatacttattt 280

                                                                       
Query: 60  tttaaaaatgggttactaatgagtaattataattgcagaaagctgtagatttgtgaaaag 119
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tttttaaatgggttactaatgagtaattataattgcagaaagctgtagatttgtgaaaag 220

                              
Query: 120 aattccaggtccatacgta 138
           ||||||| |||||||||||
Sbjct: 219 aattccaagtccatacgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 540
Length adjustment: 8
Effective length of query: 131
Effective length of database: 532
Effective search space:    69692
Effective search space used:    69692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)