Query= MSMg01no061_k04.b1 MSMg01no061_k04.b1 CHROMAT_FILE:
MSMg01no061_k04.b1 PHD_FILE: MSMg01no061_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:40 2005
(530 letters)
>mm_chr18_58432069_58432999
Length = 931
Score = 574 bits (297), Expect = e-168
Identities = 321/329 (97%), Gaps = 1/329 (0%)
Strand = Plus / Minus
Query: 5 gaattcagagaaagaactc-atgaggagtagaggcaggaagcctatcaggaagctgctgg 63
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct: 329 gaattcagagaaagaactcaatcaggagtagaggcaggaagcctatcagaaagctgctgg 270
Query: 64 tttcttctaccactgtggattgcctattcaggcgtagccccaccctcctgggcttggccc 123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 269 tttcttctaccactgtggattgcctattcaggcgtagccccacccacctgggcttggccc 210
Query: 124 tcccaagcctgatatagatgtctcctgagaggctccaccagtgctggacaaatacagagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tcccaagcctgatatagatgtctcctgagaggctccaccagtgctggacaaatacagagg 150
Query: 184 atgcttgcagcccaccattggactgagcacagggtgcccaatgaaggacctagagaaagg 243
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 149 atgcttgcagcccaccattggactgagtacagggtgcccaatgaaggagctagagaaagg 90
Query: 244 acccaaggagctgaagggttttgcagccccataggaggaacaacaatatgaactaaccag 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 acccaaggagctgaaggggtttgcagccccataggaggaacaacaatatgaactaaccag 30
Query: 304 tacccccagagttcccgggggttaaatca 332
|||||||||||||||| ||||||||||||
Sbjct: 29 tacccccagagttcccaggggttaaatca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space: 478920
Effective search space used: 478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no061_k04.g1 MSMg01no061_k04.g1 CHROMAT_FILE:
MSMg01no061_k04.g1 PHD_FILE: MSMg01no061_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:04:40 2005
(613 letters)
>mm_chr18_58281572_58282584
Length = 1013
Score = 1123 bits (581), Expect = 0.0
Identities = 605/613 (98%)
Strand = Plus / Plus
Query: 1 caaaatgacataaggctcgttaaatcttgctattaaaatgcttttaaagaaaagacttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaatgacataaggctcgttaaatcttgctattaaaatgcttttaaagaaaagacttat 260
Query: 61 tagtgacacttcaactctttttaaatgtggcaaatgttagtttctatgttaaagatattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgacacttcaactctttttaaatgtggcaaatgttagtttctatgttaaagatattt 320
Query: 121 tttcctgggttttttaaaaagaaaattttgattaacacactaggtaaaattaagttagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcctgggttttttaaaaagaaaattttgattaacacactaggtaaaattaagttagga 380
Query: 181 tttgtcttcctaaattagcattaaatggaatggggaaagctctggtatttgaagattaaa 240
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tctgtcttcctaaattagcattaaatggaatggggaaagctctggtttttgaagattaaa 440
Query: 241 aatgactagctaaatgcctctgccccatgaaactctacccttgttcccgagagagaaagg 300
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 441 aatgactagctaaatgcctctgccccatgaaactcttcccttgttcctgagagagaaagg 500
Query: 301 atgtagctcgctgacattttataaggtggtttagactcagcgtacttgctgattttctta 360
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtagctcgctgacagtttacaaggtggtttagactcagcgtacttgctgattttctta 560
Query: 361 cgatcctgtagggagaactgtgtgaaacaggacaaggaagcagggtagagtcacaaactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgatcctgtagggagaactgtgtgaaacaggacaaggaagcagggtagagtcacaaactc 620
Query: 421 tcagagtaaagttcaaatagcgtgctgtctcaggctgaagaaaattctgacgtcacccag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcagagtaaagttcaaatagcgtgctgtctcaggctgaagaaaattctgacgtcacccag 680
Query: 481 ctcagtgccatttgcatgtccaccatgtgtttatagaacagaaaacagagagggattcat 540
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 681 ctcagtgccatttgcatgcccaccatgtgtttatagaacagaaaacagagggggattcat 740
Query: 541 atattcatgacatatgattcgatcataaataatttcgatctaagaaaataaacacttgga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atattcatgacatatgattcgatcataaataatttcgatctaagaaaataaacacttgga 800
Query: 601 tttttaaaacccg 613
|||||||||||||
Sbjct: 801 tttttaaaacccg 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
