Query= MSMg01no062_b18.b1 MSMg01no062_b18.b1 CHROMAT_FILE:
MSMg01no062_b18.b1 PHD_FILE: MSMg01no062_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:21 2005
(571 letters)
>mm_chr18_61233983_61234952
Length = 970
Score = 859 bits (444), Expect = 0.0
Identities = 472/486 (97%), Gaps = 11/486 (2%)
Strand = Plus / Minus
Query: 91 tggtgttcccctgtactgaggcatatagggtttgcaggaccaaggggcctctcttctcaa 150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 970 tggtgttcccctgtactgaggcatatagggtttgcaggaccaaggggcctctcttcccaa 911
Query: 151 tgatggccgactgggccatcttctgatacatatgtagctagagacacgagctccgggggt 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 tgatggccgactgggccatcttctgatacatatgtagctagagacacgagctccgggggt 851
Query: 211 actggttggttcatgttgttgttccacctacagggttgcagacccctttggctccttttt 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 850 actggttggttcatgttgttgttccacctacagggttgcagacccctttggctcc----t 795
Query: 271 t----gctttctctagctcctccaatattagttttaaacaattacttgagaaagtggagg 326
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tgggagctttctctagctcctccaatattagttttaaacaattacttgagaaagtggagg 735
Query: 327 gagctgcctcctttatttataatgaagtatgttttgccttgatagaaatataaaaggcct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gagctgcctcctttatttataatgaagtatgttttgccttgatagaaatataaaaggcct 675
Query: 387 ataatagaagtag-accctcatgaataaagatacaagaattctttttttaaaaaaaagga 445
|||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 674 ataagagaagtagaaccctcatgaataaagatacaagaattctttttttaaaaaaa--ga 617
Query: 446 ataaaaaaagaaatacggtcattgcaagcacagacaacagtccatgcgcaatgtacttct 505
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 aaaaaaaaagaaatacggtcattgcaagcacagacaacagtccatgcgcaatgtacttct 557
Query: 506 gtatttaggctgattacacaacaccgaggaaaatcccagatctcacaacaagcagctgca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gtatttaggctgattacacaacaccgaggaaaatcccagatctcacaacaagcagctgca 497
Query: 566 aagggc 571
||||||
Sbjct: 496 aagggc 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no062_b18.g1 MSMg01no062_b18.g1 CHROMAT_FILE:
MSMg01no062_b18.g1 PHD_FILE: MSMg01no062_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:21 2005
(291 letters)
>mm_chr18_61077799_61078489
Length = 691
Score = 540 bits (279), Expect = e-158
Identities = 288/291 (98%)
Strand = Plus / Plus
Query: 1 tgtatagtgagggtgggggaaacagctgtgaaaggagcctttgatttggtcttgaacaca 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtatagtgagggtgggggaagcagctgtgaaaggagcctttgatttggtcttgaacaca 260
Query: 61 gttcttccccacagggccttgatttccctgcttgcaaaggagtagggaaatatgagcctt 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gttcttccccacagggccttgatttccctacttgcaaaggagtagggaaatatgagcctt 320
Query: 121 ggctctgcctacctcacgttgctggtgctgtagaaaactggccaggctgatggttgtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctctgcctacctcacgttgctggtgctgtagaaaactggccaggctgatggttgtgga 380
Query: 181 ggagcctgtgaacttgattaaagtgccattatccagaggcaagagatgctggtctgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagcctgtgaacttgattaaagtgccattatccagaggcaagagatgctggtctgtgtg 440
Query: 241 tgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 291
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 491
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
