BAC Information

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BAC

Clone NameMSMg01-062H22
Chromosome18 (Build37)
Map Location 61,941,619 - 61,942,265
singlet/doubletsinglet
Overlap geneAfap1l1
Upstream geneLOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2
Downstream geneLOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062H22.T7 (MSMg01no062_h22.b1)MSMg01-062H22.TJ (MSMg01no062_h22.g1)
ACCAG288456AG288457
length1,1851,145
length of high quality
(start - end)
604 (91 - 694)649 (134 - 782)
definitionCHROMAT_FILE: MSMg01no062_h22.b1 PHD_FILE: MSMg01no062_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:09 2005CHROMAT_FILE: MSMg01no062_h22.g1 PHD_FILE: MSMg01no062_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:06:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATTTATNNNNNAATCATTCGGCGCTATAGACTACTATAGGGAGAGGAT
CCGCGGAATTCTATTTAAAATATATTCCTATTAAATTATGAACCATGACT
AAGTTTGTTTCATCCCCCGTTTAAATGATAATCCCCCCTCTATAACAAAG
AGACAAGAATCACATGATCATCTCAATAAACACAGGATGGTATTTGACAA
AGTCCAATGTGTCTTTCCGGTTAAATAAAAAAAAAAGTCCTGAATAAATT
AGTAATGGAAGGGATATGCCTCAGCATAATAAAAATATACCCAAATTGTA
CTAATGGAGAAAAAGTGAACAAATTGTCTTTAAAATCAGATACTCACTAC
GAGTGCCCACTCTTGTTGCTATTATTCAATAGAGTGCTTGAGTCTTAATT
AGATTTTTAAGAAAAGAGAAATCAATAAAGAAAATGCAAAAAGCGAAGGC
AGAAGTCAAGTCTGCAGATGGCAGGACCTACGCTTAAATGATCCAGATAG
TGGGGCTGGAGAGATGGCTCAGTGGTTAAAGACACTAGCTGCTCTTCCAC
GGGACCTGGATCTGATTCTTAGCACCCACATGGCAGCTCACAGCTGTCTG
TAATTACACACACACACACACACACACACACACACACACACACAAACCAT
GAATGCACATAAACTAAAAATAAATAAGTCAGTTTTTTAATTAGCCAGCA
GCAGGAACATCGAGGATCAGAGGAATCATGAAGCTCTTAGACTCGCTATG
TTTAAGGGGGGAAAGGAGATCCTGATAGCACCACCAGAATTCTCTTGATC
TCTGATAAACACTTCCTGAAGAGTACCCAGATATAAAATTAACATACTAA
AATCCACAGCAGCTCTTATATAACCAATAATGAATTTGCACAGTGAAAAA
AATTACCTAAGTAATAAATCTAATCCAGTTCAAAATTGGCTAAAATATGA
CAACAGCTCTAAAGTGTTTGCCTTCAAACCATTTTGTTAAGAAAAATGTT
TTTACGTGGGTGTATAACATTTGGAATTGTTAATTTCTTTCTTATATAAA
AATAAATTTTCCCTCTTTTTGTCAATAAATATTGGCATATCAATATGGAG
GTTCTAATTATTTTCTATTAAATAAATATTCTTTAAACCTCCAATATATT
TTTTCTTAACAATTTTCTACTCTCTTCTTCACTTC
CAGTCTTTNNNNACTGACGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCTTATAGCTGGAAGGGGNAAAACCAG
CAAGAGGAAGTTACCTGGTGGAAGGGAACCCAGGATTGCAGCTTAGAGAG
AGAAAACAGCCAAGGGTCTGCTCTGGCTGGTCAACAGATTCTCTCCCTTT
CTCCTTCTTTCTCTCTCTCTCTTTACATTTCATTGATTGAGAGAGGGAGA
GGGGGGCGTATGCTCCACATGCCAAGATCAGACAACAACGAGCCAGTCAG
TTCTCTCCCTCCTCTACATGAGTCTTGAGGAGCAAACTCAGGTAGTCAGA
TTTGGGGGCAATTGTCTCTACCCACTGAGCCATCTCACCGGCCCACTATT
TTTAAACGACTGCTTTGAACTGCATCAGACCCCTGTCTCCTCAGATTCCC
ATTTTCACACACTCTAATCCATAAATTCCATTAAAAGCTGCACTGTAGCA
CGAAGCCAAATAAAAGCAGGCTGTTTCAGGTCAAAGTACACACACCTGGG
AGCCCTGTGCTCTCCGCTGTGCAGGAAGGCGTTTATGGCATCCTTTGGAA
CTTTAGGCGTAGGTGAGCGCAGTCTTTAGCTTACTTATTTGTTAAGGACG
ACTTAACTCCTCCTTAGGCTCCCAGGCAGCACTTGTTTGGTTTTTTTTTT
TTTTTTTTTTACATCTCTTTTTCATTTCTTTCTTTATTGTTTCTGCCTGT
TTGTAGACCTCTTCCTGCCTCGGTTTCCTGAGTCCTGGAATGACAACCAT
TCCTCACCACACCCAATTTTGAAGTTTGAACCGGTTTCTTTTATTCCTAG
AATTCAAAGTGGGACCCTGGCATCATCAGCCTTTTGTTTCACCTTTTAAA
AAACCTTTCTGGAAAAATATTTCCTACAACTCCCTAAAGGAATGCTAGGT
TGTAAATCCTCCTATTAATGGCGTCCCCTTCAAGTTTATGTCCTGGTTTA
TAAATTTTGCTCCGTATTCTCTTGAAATTCTTTTTTTGTTATTCGTAACC
TCTCCCATTAAAATAAACCTTTGTTTTCTTCTGTCTTTTTTCTACAATTT
TTCTATTCTCATCATCATTATTCCTTTTATACAATTTCTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_h22.g1 MSMg01no062_h22.g1 CHROMAT_FILE:
MSMg01no062_h22.g1 PHD_FILE: MSMg01no062_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:09 2005
         (649 letters)



>mm_chr18_61941419_61942467
          Length = 1049

 Score = 1174 bits (607), Expect = 0.0
 Identities = 638/649 (98%), Gaps = 2/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gattgcagcttagagagagaaaacagccaagggtctgctctggctggtcaacagattctc 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattgcagcttagagagagaaaccagccaagggtctgctctggctggtcaacagattctc 260

                                                                       
Query: 61  tccctttctccttctttctctctctctctttacatttcattgattgagagagggagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctttctccttctttctctctctctctttacatttcattgattgagagagggagaggg 320

                                                                       
Query: 121 gggcgtatgctccacatgccaagatcagacaacaacgagccagtcagttctctccctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggcgtatgctccacatgccaagatcagacaacaacgagccagtcagttctctccctcct 380

                                                                       
Query: 181 ctacatgagtcttgaggagcaaactcaggtagtcagatttgggggcaattgtctctaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacatgagtcttgaggagcaaactcaggtagtcagatttgggggcaattgtctctaccc 440

                                                                       
Query: 241 actgagccatctcaccggcccactatttttaaacgactgctttgaactgcatcagacccc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 actgagccatctcaccggcccactagttttaaacgactgctttgaactgcatcagacccc 500

                                                                       
Query: 301 tgtctcctcagattcccattttcacacactctaatccataaattccattaaaagctgcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctcctcagattcccattttcacacactctaatccataaattccattaaaagctgcac 560

                                                                       
Query: 361 tgtagcacgaagccaaataaaagcaggctgtttcaggtcaaagtacacacacctgggagc 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtagcatgaagccaaataaaagcaggctgtttcaggtcaaagtacacacacctgggagc 620

                                                                       
Query: 421 cctgtgctctccgctgtgcaggaaggcgtttatggcatcctttggaactttaggcgtagg 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 cctgtgctctccgctgtgcaggaaggcgtttatggaatcctttggaactttaggcgtagg 680

                                                                       
Query: 481 tgagcgcagtctttagcttacttatttgttaaggacgacttaactcctccttaggctccc 540
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 tgagcgcagtctttagcctacttatttgttaaggacgacttaacccctccttaggctccc 740

                                                                       
Query: 541 aggcagcacttgtttggttttttttttttttttttttacatctctttttcatttctttct 600
           ||||||||||||||||||| |||||||||||||||  | |||||||||||||||||||||
Sbjct: 741 aggcagcacttgtttggttgttttttttttttttt--aaatctctttttcatttctttct 798

                                                            
Query: 601 ttattgtttctgcctgtttgtagacctcttcctgcctcggtttcctgag 649
           |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 799 ttattgtttctgtctgtttgtagacctcttcctgcctcggtttcctgag 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)