BAC Information

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BAC

Clone NameMSMg01-063H22
Chromosome18 (Build37)
Map Location 19,735,910 - 19,736,192
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658, LOC665624, LOC665629
Downstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063H22.T7 (MSMg01no063_h22.b1)MSMg01-063H22.TJ (MSMg01no063_h22.g1)
ACCAG289222AG289223
length669663
length of high quality
(start - end)
583 (25 - 607)283 (55 - 337)
definitionCHROMAT_FILE: MSMg01no063_h22.b1 PHD_FILE: MSMg01no063_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:52 2005CHROMAT_FILE: MSMg01no063_h22.g1 PHD_FILE: MSMg01no063_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATACGGAGAGGATCCGCGGAATTCCTTTTA
TCTAAGAGAACACTGTTGCAGATCCATCCAGATGTTGTTCTAAATAAAGT
TCAAATTAACCGTTTATAAAGGGTCAATCAGACTGTAGAACTTATAAAGG
CATTACAATCTGGCTTGCCTACTTCATGTAAAGTTATTATAGGTTTAAAG
GTTTGTTTTTTTCCCTTGCATGGTAAAGGGTTTGCTTCTAATGAACTGGT
AATCACTGGAAAACTTTGCCTCCAGGTATGGCTAATATTGCTTTACATTA
TGTAAGAAAAATTTTGTTGTCTCTGCTTCTATACAAGAAGCTAATATGTT
TGAATCTTTCAGCGCATATTGTTTCCTAAGTGGAAAGTATTTTATCAGCT
AATGCCTCTCAAGGAAAGTTTACTTCAAATCTTTGCTGTCACACAATGAG
CTTTAAAGTTCTGGGGAGTAGCTGTTGCTCCAGAAAAGATTCAGAGGCAA
TATCTTTTTAATATTTAGGGTTTTAGTTATACTATAAAATTGTGGTACAG
AAAATCTAAGAACAAAAAATTGCTTTGCTTCAAAATTTTATTTTCCAAAG
CTTCCAGGAGATGTTAATTGGCTAAGATCTTACCTTAAACTCACCAAGGG
AGAACTTAAGCCTTTATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXATGATGATTCTCCTTTATTTTGTTCATTTATATAATTACTTGTATC
TTGCTTTATGAAAATATACCTTTATGTTCCAAGAGCTTATGATGCCCAGT
ACCCTAAAGCACCACAGAGCTGTACATATACTAGTCTGACGTTGAGGACA
CAGAAGGCTCTAAGTAACTGAGCAGTGGTTTTGCCAATCAGGATGTGGCC
AATTCTCACCAATTATTATTTTTAACAAAGGTGAAGGAAATCAAAAGAGT
TTTTCTTCTATACAATCTTATGAGATTCATAAATTTTCTATTCTCACACC
CCAGCTTGGCCATGGAGGATTGAAAATCATCCTTAACTCTCTATGGCATT
ATGACACTCTCCATAGACATATGGATATATATAGATAACTCTATCCTAGT
GTTGCACTTTTATAGATGTTAAGAAGATGTAACAATAACAATAATAATGA
TGATTATGATGATTATAATAATTTTACTGGATTAATAACATACATAACTT
ACCTTCCAGGTACTTTTATCTTGTTTCTTAGTCACCTCTTCATTCTTGTA
GTTCCTGTTACCTCCTCCCTTTCTAAACTGAGCACCCTGCTCTCATCTGT
CCAAGACGCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_h22.g1 MSMg01no063_h22.g1 CHROMAT_FILE:
MSMg01no063_h22.g1 PHD_FILE: MSMg01no063_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:53 2005
         (283 letters)



>mm_chr18_19735710_19736392
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatgattctcctttattttgttcatttatataattacttgtatcttgctttatgaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 atgatgattctcctttattttgttcatttatataattacttgtatcttgctttatgaaaa 424

                                                                       
Query: 61  tatacctttatgttccaagagcttatgatgcccagtaccctaaagcaccacagagctgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tatacctttatgttccaagagcttatgatgcccagtaccctaaagcaccacagagctgta 364

                                                                       
Query: 121 catatactagtctgacgttgaggacacagaaggctctaagtaactgagcagtggttttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 catatactagtctgacgttgaggacacagaaggctctaagtaactgagcagtggttttgc 304

                                                                       
Query: 181 caatcaggatgtggccaattctcaccaattattatttttaacaaaggtgaaggaaatcaa 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 303 caatcaggatgtggccaattctcaccaattattattttcaacaaaggtgaaggaaatcaa 244

                                                      
Query: 241 aagagtttttcttctatacaatcttatgagattcataaatttt 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aagagtttttcttctatacaatcttatgagattcataaatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)