BAC Information

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BAC

Clone NameMSMg01-063J06
Chromosome18 (Build37)
Map Location 44,019,100 - 44,019,605
singlet/doubletsinglet
Overlap genenone
Upstream genePpp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
Downstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063J06.T7 (MSMg01no063_j06.b1)MSMg01-063J06.TJ (MSMg01no063_j06.g1)
ACCAG289282AG289283
length752742
length of high quality
(start - end)
496 (113 - 608)462 (133 - 594)
definitionCHROMAT_FILE: MSMg01no063_j06.b1 PHD_FILE: MSMg01no063_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:59 2005CHROMAT_FILE: MSMg01no063_j06.g1 PHD_FILE: MSMg01no063_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:07:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNNCCCC
CCATATAATANNANAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCGCGGAATTCAAAGCCCACACCTAAACATAATTAAAGC
AATTTACTCCAAACCAACAGCCAATATCGAATTAAATGCAGACATACTTG
AAGCAATTCCACTGAAATTGGGGACAAGACAAGGACACTCTCCCCATATC
TATTCAATATAGTACTCTAAGTGTTAGCTAGAACAATACAACAATGAAAA
GAGATCAAAAGGATATGAATTGGTAAAGAAGAAATAAAGGGATCACTATT
TGCAGATGATATGATAGGATACATAAGTGACCCCAAATATTCTACTAGAG
AATTTCTCCAGCTGATAAACAACTTCAGCAACATGGCCAGATATAACATC
ATCTGAGATTAATCAGTAGCATTGTTTTACACAAAGGATAAACAGGCTGA
GAAGGAAATTAGGGAAACATATCCCTTCACAATAGCCACAAATAGTATAA
AATGTCTTGGGGTAACTCTAACCAAACAAGTGAAAGACCTGTATGACAAT
AAGTTCAAGTCTCTCAAGAAAGAAATTGAAGACGATCAAAGAAAATGGAG
AGATCTCCCAGACTTATGGATTGGCCAAATTAACATAGTAAAAATGGCCA
TCCTACCAAAGGTAATCTGTAGATTCCATGCAATCCCCATCCAAATCCCA
AC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCTCNNCNNNCCTTT
TCTNNTACTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAGGAAGCTGTGGCT
AGAGGTAGAAAATAAATTGCAGAGCTACTTAATTATTTATAAAAAATGTA
ATATCAGAAAAAGGCGTTGATGTAAGGAGAATTGAAGGCTAAGTGATCCT
TGTTTGTTACCATAGTAGTATTGAGTTTGGAGCATGAATTTTTAAGAATC
AATTCTTCCTGTGCTGGTACATATATGAGCATCAGCACTGGATTCTCGAG
TGTTCTATATCAGTTCAGCTCTATTTCTCACTATCTGGTGTGACCTACAG
AAAATCACATAAGTTCTTATGCCTCAGTTTCTACATCCATAAAATTGAAT
CATAACAATACTGCTACCTTAAAGGGTTGCATATATTTTTCATCTCTATC
TCTCTATTTATCTATCTCTATTTCTATCTCTTTCTCTATATCAAATGAGG
ATAGGTAGTGAAAAACAGTGAATAGGCTAGGTAATGAATACAGTCTTAGA
TCAATATCTGGCACATTTGAAAGCCCAATGAATGCATGCAGCTATTACTA
GCCAGAGCATTTTACATGATTTTATGCACTTACAACGAAAAAAATGACCT
CCTATTAAGGCTTACTTTAATGCATACTCCAATTTCATGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_j06.g1 MSMg01no063_j06.g1 CHROMAT_FILE:
MSMg01no063_j06.g1 PHD_FILE: MSMg01no063_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:07:59 2005
         (462 letters)



>mm_chr18_44018900_44019761
          Length = 862

 Score =  727 bits (376), Expect = 0.0
 Identities = 452/506 (89%), Gaps = 44/506 (8%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaggaagctgtggctagaggtagaaaataaattgcagagctacttaattatttataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaggaagctgtggctagaggtagaaaataaattgcagagctacttaattatttataa 260

                                                                       
Query: 61  aaaatgtaatatcagaaaaaggcgttgatgtaaggagaattgaaggctaagtgatccttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatgtaatatcagaaaaaggcgttgatgtaaggagaattgaaggctaagtgatccttg 320

                                                                       
Query: 121 tttgttaccatagtagtattgagtttggagcatgaatttttaagaatcaattcttcctgt 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tttgttaccatagtagtattgagtttggagcatgaattcttaagaatcaattcttcctgt 380

                                                                       
Query: 181 gctggtacatatatgagcatcagcactggattctcgagtgttctatatcagttcagctct 240
           ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 gctagtacatatatgagcatcagcactggattctagagtgttctatatcagttcagctct 440

                                                                       
Query: 241 atttctcactatctggtgtgacctacagaaaatcacataagttcttatgcctcagtttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctcactatctggtgtgacctacagaaaatcacataagttcttatgcctcagtttct 500

                                                                       
Query: 301 acatccataaaattgaatcataacaatactgctaccttaaagggttgcatatatttttca 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 acatccataaaattgaatcataacaatactgctaccttacagggttgcatatatttttca 560

                                                                       
Query: 361 tctctatctctctatttatctatctctat------------------------------- 389
           ||||| ||||||| | | ||| |||||||                               
Sbjct: 561 tctctctctctctctctctctctctctatatatatatatatatatatatatatatataaa 620

                                                                       
Query: 390 -------------ttctatctctttctctatatcaaatgaggataggtagtgaaaaacag 436
                        |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tatatatatatatttctatctctttctctatatcaaatgaggataggtactgaaaaacag 680

                                     
Query: 437 tgaataggctaggtaatgaatacagt 462
           ||||||||||||||||||||||||||
Sbjct: 681 tgaataggctaggtaatgaatacagt 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)