BAC Information

Click to search

BAC

Clone NameMSMg01-064F09
Chromosome18 (Build37)
Map Location 19,341,673 - 19,341,948
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040658
Downstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064F09.T7 (MSMg01no064_f09.b1)MSMg01-064F09.TJ (MSMg01no064_f09.g1)
ACCAG289836AG289837
length1,217730
length of high quality
(start - end)
421 (29 - 449)277 (76 - 352)
definitionCHROMAT_FILE: MSMg01no064_f09.b1 PHD_FILE: MSMg01no064_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:11 2005CHROMAT_FILE: MSMg01no064_f09.g1 PHD_FILE: MSMg01no064_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:09:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGCATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
TTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATACCCCCTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGAGTCTCTGGTTTTATGTGAAGTTCCTTGATCCTTTT
AGATTTGACCTTAGNACAAGGAGATAAGTATGGATCGATTCGCATTCTTT
TTTTCCCCCCCCCCAGTTGTGCCAGCTCCGATTGAAAAAAAGGGTGTCTT
TCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAG
GTGTGTGGGTTCATTTCTGGCTCTTCAATTCTATTCCATTGGTCTACTTG
TCTGTTTCTATTTCAGTACCTTGCAGTTTTTATTCCAATTGCTCTTGTTT
TAATGTTTATGTCTTGTATGTTGTTTCCTCCTTAAGATCTTTTCTTCTCT
TGATAATACTTTTTGCTATCCTTATTTTTTTTTTTTTTTCCATATTTATC
TTTTTTTCTTTTTTCTTCCCTTTCTGATTTCTTTTTTTCTTTCTCTCTTA
ATTGTTCAACTTTTTTTCTTTTCTTTTTTTCTCTTTTACTGATTTTTTTT
CCTCTCTACTTTTTATTTCTTTTTTTTTTATTCTTTTATATTCCTTCTTT
TTTTTTTTTTTCTTCTCTTTTATTCTTCTTTCTTTTATTTTTTTTCATCT
TTATTTTTTTTTTTTTATTTTCCTTTATTTCTCTTACTCCTTTCTTTTCT
TTTTCCTTACCTTTGCTTACTATCTTTCTTCTATTTTTTTTTCTTTTCTT
TATTTTTTTCCTTCTCTCTTCTTTCTTTTCTTATTTCTTTCTATCCTTTT
CTTCCTTTATCCCTTCATATACTTCTTTTCTTCTCTTTATGTTTCTTTTC
ACTTTTCTTATACTTCTTTTTATTCCACTCTTTTTACATGTTTCTTTATT
TTCATTTCTATTTCTTT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTGGATACTAATGAACATATGTA
CTTAAAATAAAAACTGAAATGGCTATTTTTTTCAGCAAAAACATATAATA
AAGAGAATAATAAACACATTTCAATATATTCATTACTCCATATTTTCAAG
ATGGAAAAATATTAGCAACCATAATTCTTATTTTTCTATTTCTTTTTTTT
TCTTTTTCTGATGAATAAAGCAAGACAAGAAAGATTTAGTTCATTTCATT
GTTCAATCACATATCAGGCACAATTATGATCACAGATAATTTTTTCAATG
TAGTTATTTTGGAATACCACCAGCACAATTTTGAATATATTCAAATTCCA
TGTAGATAGAGCCCCACCCGGAGAAAAAGCTATGACATGGAAGTAGGAGC
TTGGAGCTGGTTGATAATATTTAATACACACACACACACACACACACACA
CACACAGGTAGAATGAGGCTATACACCTTTTAAATCCCACTTCCCCATTT
ACATATTTCCTCCAGGAAGCCTTCACCTCTTAAATTTTCTATGAACCTCT
TAAACAGTACCACCAGTAGGAAAGTAAGTATTTAAATACATGAGACTATG
GGGCACATATTCCATTTAAATCCCCACCAAGAGAAAAATAAAATCCTTTC
CACAGCATATAAGTTCCTTATATTTGTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_f09.g1 MSMg01no064_f09.g1 CHROMAT_FILE:
MSMg01no064_f09.g1 PHD_FILE: MSMg01no064_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:09:11 2005
         (277 letters)



>mm_chr18_19341473_19342148
          Length = 676

 Score =  513 bits (265), Expect = e-150
 Identities = 274/277 (98%), Gaps = 1/277 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggatactaatgaacatatgtacttaaaataaaaactgaaatggctatttttttcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ttttggatactaatgaacatatgtacttaaaataaaaactgaaatggctatttttttcag 417

                                                                       
Query: 61  caaaaacatataataaagagaataataaacacatttcaatatattcattactccatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 caaaaacatataataaagagaataataaacacatttcaatatattcattactccatattt 357

                                                                       
Query: 121 tcaagatggaaaaatattagcaaccataattcttatttttctatttctttttttttcttt 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 356 ttaagatggaaaaatattagcaaccataattcttatttttctatttctttttttt-cttt 298

                                                                       
Query: 181 ttctgatgaataaagcaagacaagaaagatttagttcatttcattgttcaatcacatatc 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 ttctgatgaagaaagcaagacaagaaagatttagttcatttcattgttcaatcacatatc 238

                                                
Query: 241 aggcacaattatgatcacagataattttttcaatgta 277
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 aggcacaattatgatcacagataattttttcaatgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 676
Length adjustment: 9
Effective length of query: 268
Effective length of database: 667
Effective search space:   178756
Effective search space used:   178756
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)