BAC Information

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BAC

Clone NameMSMg01-064P15
Chromosome18 (Build37)
Map Location 62,513,571 - 62,513,696
singlet/doubletsinglet
Overlap geneHtr4
Upstream genePpargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
Downstream geneFbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064P15.T7 (MSMg01no064_p15.b1)MSMg01-064P15.TJ (MSMg01no064_p15.g1)
ACCAG290296AG290297
length1,403739
length of high quality
(start - end)
229 (28 - 256)126 (87 - 212)
definitionCHROMAT_FILE: MSMg01no064_p15.b1 PHD_FILE: MSMg01no064_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:21 2005CHROMAT_FILE: MSMg01no064_p15.g1 PHD_FILE: MSMg01no064_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCC
CCCATATCAAGACAACACTGCACTCGATCATATCACAGTCTACCTTTTGC
CACATGACATAACTTATTTGTAGGTACCCGCGGACAGGGTGTGGACCTCA
TTGAGTGGGCATTATTTTGCCCAACATGGCTGATTCTGAGCTGTCCACAG
ATCAGTCTGTGGCTCCAGAGATGTAGAGTGGCTGTGGCGGGGGGGGGGGG
AGAAGTCTTNNTCTNTTTTTTCCTTGTTTTTTTTTTTTTTTTTCTGTTCC
TGCCTCTTTTGTTTTTTTCCTGTGTCCCCTCCTCTTTTTCCTCCTTTTCT
TTCTTGCTCTCTCTTCCTTTTGTTGTTTGTTTTCTCTTCTCCCCTTTTTT
TTTTTTTTCCTTCTGNGGCTTTCTCCTTTTTCCTGGTGTGTGGGNTGTTT
TTTTTTTTTCCCCCCCCCCCNNGNNNNNNNCCTCCCTCCTCAAAAAAAAA
AGAGGGGGGTTTTTTTTTTTTTTTTGNTCCTTCCTCTCGTTTTTTCTCTC
TTCTTTTCTCTCTTCTTTGTTCCCTCGTTTTCTTGCTTTCGCTTCTCTTT
TTTTCTCTCTCTTTCTTTTTTTTCTTTTCTTTCCTCGTTCTCTTCTTTTT
CTTCTTCTCTCCTTCTTCTCCTTTCTTCCTCTTTTTTTTTCTCTCTTCTT
CTTTCCCCTCTCCCTTTTTCTTTTCTGTTCCTCCTTTTCTTTTTTCTTTT
TCTTCTTTTTTTTTCTTTTTCTTCCCTCTTCTTTTCTTCTCTTTTCCTTT
CCTTCTCTTCTTCTCCTTTTTTTCTGCTTTCTCTCCTTCTCCTCTTCTTC
TTTTCTTTCTCTTTTTCTCCTTTTGCTTCTCCTTCCCTCTTTTCTTCTTC
TTCTTTTCTTTCTTTCTCCTTGCTTCTTCTCTCCTCCTTCTTTCTGTTCC
TTTCTTTTCTTCTTTCCTTCTCCCTTCTTCTTCCTTTCCCTCTCTTCCTC
TTTTTTTCTCTCTTCTTCTTCTTTTCGTTTTTCCCTTCCCTTCTTTCTCT
TCTCCTCTTTCCCTCTGCTCTCTCTCTCTCTCTTTTCCTCTCTTTTTCTT
CTCTTCTTTCTGTCTCTCTTATTCTCTTCTTCTTTCTTCTGTCTCTCTTT
CCCTCCTTTTCTCGTCCTTCCTCTTTTTCTTTTTTCTCTTTTCTTTTCTC
TTCTTTCTTCTTTTCTCCTCTCCTTCTTCTCTTCTCTCTTTCTTCCTCTT
CCCTCTTCTCTCCTGTTTCTTTTTTCTCTCGTCTCTTTTTCGTTCCTTCT
CCGCTCTTCCCTTTTTTCTCTTCTCTTTGTTCTCTTTCTCTTGTTCTATC
GCTTCTATTCCTTTCTTTTCTTCTTTTACTCATTCTCCCTATTCATTACT
TTT
GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGGACCTGGCACATCTCAAATAGG
AGAGGCAGTTGCCTGTGACTCACAACCTCCTGAGGAAACTTCGCCCCATA
AATAGCTTGTTTTCTCTTTGACTGGTTCATATTCCAGGAGTTCTTCCTCA
TTTTTGATCAGAAAGCTTGGAAGGTCTCAAACTCAGGATGAATGGCAAAC
AGAGGCGCCCATTATATCAAAGATGACAATACTGGTTGCCAGGTTCTCTC
AGCATCTCTCAGTCCCTACTTGTTACAGAGTCCTCCTAATTTTCATATGC
CAATTTTTATTTTTGACCCCCCCACCACTAGGGCTGGGCTGTCCTTCTCC
CAGATGTTCTCCCCCATATAAACAAACCATTTTGGTTACATAGTCCTTTT
TGGCCCTTTTCATCTCTGGGCCAGTCTCTTGGTCTAGGCTGTCCCTCTTG
ATCAGCAGCTCCTCTCTTGCTCTCCTCCCCTTCTCTCTTCTCATGGCCTG
GCTCAGCCTAGCCATGTCCACTCTGGACTCCCTTAAATCTCTTTATCTCT
GCCCCTTTCTGAATTCTTCCTTTTACCCAATCTTCTCCTCCATCATACCT
AGGGGCAGCCCTGCCCTCCTTTGCTTTCTTCTCTATTCAATTCAGCTAGC
TACTATTCCTCTGCCTTCTCCTACCACCCCCGAGATGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_p15.g1 MSMg01no064_p15.g1 CHROMAT_FILE:
MSMg01no064_p15.g1 PHD_FILE: MSMg01no064_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:21 2005
         (126 letters)



>mm_chr18_62513371_62513896
          Length = 526

 Score =  221 bits (114), Expect = 2e-62
 Identities = 123/126 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatctcaaataggagaggcagttgcctgtgactcacaacctcctgaggaaacttcgccc 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 acatctcagataggagaggcagttgcctgtgactcacaacctcctgaggaaacttcgcct 260

                                                                       
Query: 61  cataaatagcttgttttctctttgactggttcatattccaggagttcttcctcatttttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 cataaatagcttgttttctctttgactggttcatattccaggagttctccctcatttttg 320

                 
Query: 121 atcaga 126
           ||||||
Sbjct: 321 atcaga 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)