BAC Information

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BAC

Clone NameMSMg01-065M10
Chromosome18 (Build37)
Map Location 5,358,889 - 5,359,224
singlet/doubletsinglet
Overlap genenone
Upstream genePapd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
Downstream geneLOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469, EG621100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065M10.T7 (MSMg01no065_m10.b1)MSMg01-065M10.TJ (MSMg01no065_m10.g1)
ACCAG290905AG290906
length677680
length of high quality
(start - end)
340 (73 - 412)315 (76 - 390)
definitionCHROMAT_FILE: MSMg01no065_m10.b1 PHD_FILE: MSMg01no065_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:22 2005CHROMAT_FILE: MSMg01no065_m10.g1 PHD_FILE: MSMg01no065_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAACCCATTTCGAGATGTTCATGTGTTTGTCTCTGAGTCACACA
TCTCTCTCATTTCCAATGGGTTTCCAATCTGAGAAGGACATTATATGCCA
GGTTTCCAGAAGTTTCAACACCACAAGAGTGATCTCAATTTGTGTGAGGG
CTTTTTAGTTTCATGCAAGACAATTCCAAGTTTGAAAACTGGGCAGAGTC
GGGACTGTTTTCCTGTGTAGAAAGGCTAACATAAAGCAGATGTGGATCTC
TTTTTCCAATCTGGACGATTTGTCAAGGAATGTTAACTCTTCAAAACACA
CACACACACACACACACACACACACACACACACACACACACACACATAAA
CACACACACACACACACAAAGGCAGAAATAACAGGCTATTACACTTACTT
TTCATGTCCCCTTATTAATAAAAACCAATGTACTGTATAAACAAACTAAG
AATAACATAGACAAATGACCTCTTGGCCATAATCCCCTGTTTTGTGGAAA
AGTATCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATTT
GTTAAGCAAATTTAATAAATTTTCATAGACACTAGGAATCTATGGATGTG
TGAACTTCATTACTTGCCTTACGGGCG
NTTCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATAGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACGGTTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGCAACACATTCCCAAAGGAACTCCCACAATATGTACTCTCTGATAAG
GGGATATTAGCCCCTATACTACTTATCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_m10.b1 MSMg01no065_m10.b1 CHROMAT_FILE:
MSMg01no065_m10.b1 PHD_FILE: MSMg01no065_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:22 2005
         (340 letters)



>mm_chr18_5358752_5359491
          Length = 740

 Score =  623 bits (322), Expect = 0.0
 Identities = 334/340 (98%), Gaps = 4/340 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttcatgtgtttgtctctgagtcacacatctctctcatttccaatgggtttccaatctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gttcatgtgtttgtctctgagtcacacatctctctcatttccaatgggtttccaatctga 414

                                                                       
Query: 61  gaaggacattatatgccaggtttccagaagtttcaacaccacaagagtgatctcaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaaggacattatatgccaggtttccagaagtttcaacaccacaagagtgatctcaatttg 354

                                                                       
Query: 121 tgtgagggctttttagtttcatgcaagacaattccaagtttgaaaactgggcagagtcgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgtgagggctttttagtttcatgcaagacaattccaagtttgaaaactgggcagagtcgg 294

                                                                       
Query: 181 gactgttttcctgtgtagaaaggctaacataaagcagatgtggatctctttttccaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 gactgttttcctgtgtagaaaggctaacataaagcagatgtggatctctttttccaatct 234

                                                                       
Query: 241 ggacgatttgtcaaggaatgttaactcttcaaaacacacacacacacacacacacacaca 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ggacgatttgtcagggaatgttaactcttcaaaacacacacacacacacacacacacaca 174

                                                   
Query: 301 cacacacacacacacacacacacataaacacacacacaca 340
           |||||||| |||||||||||||    ||||||||||||||
Sbjct: 173 cacacacaaacacacacacaca----aacacacacacaca 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 63
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)