BAC Information

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BAC

Clone NameMSMg01-066B02
Chromosome18 (Build37)
Map Location 84,107,584 - 84,107,826
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066B02.T7 (MSMg01no066_b02.b1)MSMg01-066B02.TJ (MSMg01no066_b02.g1)
ACCAG291129AG291130
length669747
length of high quality
(start - end)
485 (63 - 547)244 (132 - 375)
definitionCHROMAT_FILE: MSMg01no066_b02.b1 PHD_FILE: MSMg01no066_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:44 2005CHROMAT_FILE: MSMg01no066_b02.g1 PHD_FILE: MSMg01no066_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCACCTGAGGAATACAGAATGGCTGAGAAGCACCTGAA
AAAATATTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCC
TGAGATCCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGT
GACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTATAAAACCACTCTGGAAATCAGTCTGGCGAT
TCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCTGCAATACCTCTC
CTGGGCATATATCCAGAAGATGTTCCAACTAGTAAGAAAGAAACATGCTC
CACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAAC
CCAGATGCCCCTCATCAGAGGAATGGATACAGAAAATGTGGTACGTTTAC
ACAATGGAGTACTTCTCAACGATTAAAAGGAATGAATTTATGAAATTCCT
TGGCAAATGCATGGACCTGGAGGACATCATCCTGAGTGAGGTAACCCAAT
TCCAAAAGAACTCACATAACATGTACTCACTGATAAGTGGATATTAATCC
CATATACTTAACATACCCC
NNCCCCNNNNCCCCCCCCCCCCNCCCNCCCNCNCCCCNCCCNNCNCCACC
CCTCTCCATTCTAAATTTGCGGCGCTCAACGACTCCTATAGTTCGAAGTG
GGCGGNANTCACTGNCCCATTCTAGANAAGATTAATTATTGAGGCATTCT
TCCTCTACTTTAGTCTGCTCATTCAAGTCATAATCCCGCCCTCTGTAATC
AGACCACTTCCTCTTCCTCTTGGCCACAAGGAGGACTTGAGTCTCTTCTT
TATTATCTAGCCAAGTGTTAACACTTTTGGAAACCAATGTTGCAGAGTCA
AGTAGCTGGTGCTGCTGGCGGTAGTGGGGGTGTGGCGCTTTCCCTCGCTC
TCTGCCTTCCTGCATCTAAGAATTTTTTTTTTTTATGGCTTCCTACAGTG
TAGGTGCTCAACAATTGGCTCTGACTGCCTAGAGGGCGTGTTCTGGTATT
TGCTTGGTGATCTGAACTACATAATAGGGACTTAGCATTTTCTGAGACAA
ATCTGGAAAAAAAAAATTAGAGTTCTTGGCAGTCATGAATAAAGCCTGTC
TCGGCCAAAAAACAAAAATCTTCCCCATGTGTTGATAACCTGTAAATGAT
ATACAAATCTCCTTTGTCTCCACATAAATATGGTCTGGATAAAAATACTG
GTTAACTTAGGATGGTCTTTTGTTACAGGTATTCTGAATGTTAATGGAAA
GCCTTGTTCTCGTTACATGGTCGTTAATTTAGCCCTTGTGGTGCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_b02.g1 MSMg01no066_b02.g1 CHROMAT_FILE:
MSMg01no066_b02.g1 PHD_FILE: MSMg01no066_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:45 2005
         (244 letters)



>mm_chr18_84107443_84108080
          Length = 638

 Score =  354 bits (183), Expect = e-102
 Identities = 227/251 (90%), Gaps = 18/251 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaattattgaggcattcttcctctactttagtctgctcattcaagtcataatcccgccc 60
           ||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 384 ttaattagtgaggcattcttcctctactttagtctgctcactcaa-tcataatcccgccc 326

                                                                       
Query: 61  tctgtaatcagaccacttcctcttcctcttggccacaaggaggacttgagtctcttcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgtaatcagaccacttcctcttcctcttggccacaaggaggacttgagtctcttcttt 266

                                                                       
Query: 121 attatctagccaagtgttaacacttttggaaaccaatgttgcagagtcaagtagctggtg 180
           ||||||||||||||||||||||||||||||||||||||||| |||||     ||||||||
Sbjct: 265 attatctagccaagtgttaacacttttggaaaccaatgttgtagagt-----agctggtg 211

                                                                       
Query: 181 ctgctggcggtagtgggggtg----------tggcgctttccctcgctctctgccttcct 230
           ||||||||||  | ||||| |          |||||||||||||||||||||||||||||
Sbjct: 210 ctgctggcgg--gggggggggggggggggcgtggcgctttccctcgctctctgccttcct 153

                      
Query: 231 gcatctaagaa 241
           ||||| |||||
Sbjct: 152 gcatccaagaa 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 638
Length adjustment: 9
Effective length of query: 235
Effective length of database: 629
Effective search space:   147815
Effective search space used:   147815
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)