Query= MSMg01no066_n16.b1 MSMg01no066_n16.b1 CHROMAT_FILE:
MSMg01no066_n16.b1 PHD_FILE: MSMg01no066_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:47 2005
(514 letters)
>mm_chr18_85422357_85423268
Length = 912
Score = 955 bits (494), Expect = 0.0
Identities = 507/512 (99%), Gaps = 2/512 (0%)
Strand = Plus / Plus
Query: 1 tagaagaagcagaggcaggggaaagagagcaatgagatgagattatgaaaatgtgggcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaagaagcagaggcaggggaaagagagcaatgagatgagattatgaaaatgtgggcca 260
Query: 61 gagaccataagcttcagtgaccctggggaacagctcaagagtagaacttgaatggtagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaccataagcttcagtgaccctggggaacagctcaagagtagaacttgaatggtagaa 320
Query: 121 gcaaggcatgagaaaaggaaacacagaaagggacatttcatattggtataagagagtatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaggcatgagaaaaggaaacacagaaagggacatttcatattggtataagagagtatc 380
Query: 181 cgctcatcaaatgcacatttcccaagaaaaatggatgatgacccattttctctgcagatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgctcatcaaatgcacatttcccaagaaaaatggatgatgacccattttctctgcagatg 440
Query: 241 gggcgctgtctagcacgaccatatgtcccctaggaccacttgtctagtaagaccatatgt 300
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 gggcgctgtccagcacgaccatatgtcccctaggaccacatgtctagtaagaccatatgt 500
Query: 301 gctaggatcctcagtgaactagtggttgaaatccaatactcaggattttggcaattcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctaggatcctcagtgaactagtggttgaaatccaatactcaggattttggcaattcaaa 560
Query: 361 tttacctttttttttttaatccagtggtgaaaccactcagaaaattatttaaaagacact 420
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaccttttttttt--aatccagtggtgaaaccactcagaaaattatttaaaagacact 618
Query: 421 attcattaccttcaagtggaagtaggaacctgggagataggttgcctcatgtgcagacat 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attcattatcttcaagtggaagtaggaacctgggagataggttgcctcatgtgcagacat 678
Query: 481 acatgggataaaagaagatatctaacaagaag 512
||||||||||||||||||||||||||||||||
Sbjct: 679 acatgggataaaagaagatatctaacaagaag 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 912
Length adjustment: 10
Effective length of query: 504
Effective length of database: 902
Effective search space: 454608
Effective search space used: 454608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_n16.g1 MSMg01no066_n16.g1 CHROMAT_FILE:
MSMg01no066_n16.g1 PHD_FILE: MSMg01no066_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:47 2005
(446 letters)
>mm_chr18_85543378_85544223
Length = 846
Score = 785 bits (406), Expect = 0.0
Identities = 433/446 (97%), Gaps = 8/446 (1%)
Strand = Plus / Minus
Query: 1 ccatttataatatgctatattttaacatgacaaaaataaagaaatgtcttttaagaacta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatttataatatgctatattttaacatgacaaaaataaagaaatgtcttttaagaacta 382
Query: 61 ataccttcttcaaaatatagagcacactttgtagaacacccacacacaaacacacataca 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataccttcttcaaagtatagagcacactttgtagaacacccacacacaaacacacataca 322
Query: 121 gtgtgtgagctaacaaagtaagtatgtaaggctaagactatttcattcctaacttatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgagctaacaaagtaagtatgtaaggctaagactatttcattcctaacttatgtt 262
Query: 181 ttcatccttgaaaactttaaaagaggttgttaacttgaattaatagtttatatgctaact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcatccttgaaaactttaaaagaggttgttaacttgaattaatagtttatatgctaact 202
Query: 241 aatctatctatctatctatctatctatctatatatattaatttttattaggtattttcct 300
||||||||||| ||| ||| || |||||||||||||||||||||||||||||||
Sbjct: 201 aatctatctatatatatat--at------atatatattaatttttattaggtattttcct 150
Query: 301 caattacatttccaaggctatcccaaaagtcccccataccctccccccaccctttcctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 caattacatttccaaggctatcccaaaagtcccccataccctccccccaccctttcctac 90
Query: 361 ccacccattccaattttttggccttggcgttcccctgtactggggcatataaagtttgtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89 ccacccattccaattttttggccttggcgttcccctgtactggggcatataaagtttgtg 30
Query: 421 tgtcctatggtcctctctttccagtg 446
||||| |||| |||||||||||||||
Sbjct: 29 tgtccaatgggcctctctttccagtg 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
