Query= MSMg01no066_p16.b1 MSMg01no066_p16.b1 CHROMAT_FILE:
MSMg01no066_p16.b1 PHD_FILE: MSMg01no066_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:57 2005
(445 letters)
>mm_chr18_61359334_61360179
Length = 846
Score = 762 bits (394), Expect = 0.0
Identities = 433/448 (96%), Gaps = 8/448 (1%)
Strand = Plus / Plus
Query: 1 ctacctgctac-ataatttaaaactggaacatcattcagactgcttccaaaaagaattgt 59
||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ctacctgctacaataattcaaaactggaacaccattcagactgcttccaaaaagaattgt 263
Query: 60 tttcaaggttccaaacaaatgtctacaaactcaaattggagccaggcagtggtggcacac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttcaaggttccaaacaaatgtctacaaactcaaattggagccaggcagtggtggcacac 323
Query: 120 acctttaatcccaacactggggagactggtggatctgaggtcaaggtaaggtaagcctcc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acctttaatcccaacactggggagactggtggatctgaggtcaaggtaaggtaagcctcc 383
Query: 180 tctacagaacgagttccaggatagccatggctacacggagtcaccttgtctcaaaacaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctacagaacgagttccaggatagccatggctacacggagtcaccttgtctcaaaacaaa 443
Query: 240 aaaaccaaaaaaacaaaaacaaaacaaacaaacaaaaaa-ccccacaaaacccaaaaaac 298
|||| |||||| |||||| ||||||||||||||||| |||||||||| |||||||||
Sbjct: 444 aaaaacaaaaa--caaaaa---aacaaacaaacaaaaaaaccccacaaaaaccaaaaaac 498
Query: 299 ctcaacaaaagaaaaccagtcaacaaaaagcaaacaaactcaaatcagagaaaatcttct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctcaacaaaagaaaaccagtcaacaaaaagcaaacaaactcaaatcagagaaaatcttct 558
Query: 359 actttagaaaacattatttccaaattaacaattattaccattaaactgaaggttttta-t 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 559 actttagaaaacattatttccaaattaacaattattaccattaaactgaaggtttttaat 618
Query: 418 tttcatttctagcgttaaggtctcatgg 445
||| |||||| | |||||||||||||||
Sbjct: 619 ttttatttctggagttaaggtctcatgg 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 846
Length adjustment: 10
Effective length of query: 435
Effective length of database: 836
Effective search space: 363660
Effective search space used: 363660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_p16.g1 MSMg01no066_p16.g1 CHROMAT_FILE:
MSMg01no066_p16.g1 PHD_FILE: MSMg01no066_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:57 2005
(355 letters)
>mm_chr18_61490137_61490893
Length = 757
Score = 613 bits (317), Expect = e-180
Identities = 345/355 (97%), Gaps = 2/355 (0%)
Strand = Plus / Minus
Query: 1 aaagctgtgtgtcctttgctttcatcttgcctctggctagaggactatcccagtcattct 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaagccgtgtgtcctttgctttcatcttgcctctggctagaggactatcccagtcattct 496
Query: 61 ggcaaagtccccaccccagggccaaagccccagtgtcctgcttggggagccacacagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggcaaagtccccaccccagggccaaagccccagtgtcctgcttggggagccacacagctg 436
Query: 121 gatccagatgtttttt--ccccggcagccagtgcagagcccaccatctcctcatctatga 178
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 435 gatccagatgttttttccccccggcagccagtgcagagcccaccgtctcctcatctatga 376
Query: 179 ttcggatctccccatcggtgtgtctcctctttgatccgctctcatccgcatcacatttga 238
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 375 ttcggatctccccatcggtgtgtctcctctttgatcagctctcatccgtatcacatttga 316
Query: 239 cagcagtttgttttttcagtaactccagctcttggcgtccgcagcccacagcttattttt 298
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 315 cagcagtttggtttttcagtaactcgagctcttggcgtccgcagcccacagcttagtttt 256
Query: 299 cacggagctctctcgcctcttctactaacatgttctagctaagaacgatttaagt 353
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 255 cacggagctctctcgcctcttctactaacatgttctagttaagaacgatttaagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 757
Length adjustment: 9
Effective length of query: 346
Effective length of database: 748
Effective search space: 258808
Effective search space used: 258808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
