BAC Information

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BAC

Clone NameMSMg01-067K13
Chromosome18 (Build37)
Map Location 85,707,099 - 85,707,407
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067K13.T7 (MSMg01no067_k13.b1)MSMg01-067K13.TJ (MSMg01no067_k13.g1)
ACCAG292341AG292342
length697692
length of high quality
(start - end)
312 (48 - 359)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no067_k13.b1 PHD_FILE: MSMg01no067_k13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:49 2005CHROMAT_FILE: MSMg01no067_k13.g1 PHD_FILE: MSMg01no067_k13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGTTTCTTTCTTGTTGTTCCTATCTTCTAAGTGCTAGTAGTG
TCTTTCATCTTTGTCCCTATCTGCCTCCATTTATGATTCGCTCTACTCTC
TTCTCTTTCTGCCCCCTCTCTGTGTCTCTGTGCCCTGCCTTTCATCTTTC
TTTCTCCACCTTTGTCTCTTTTATTCTTTCAGTGTCCTTCCTATCCCATG
TCTTAGTCATGGTGTATACTTGTATGCCTACATGTAGGCTTTTCCTATTT
TATAACACTATTTAAACACCATTGAGCCTGGGAGGAAAGTGATGAGATTA
ACTACTGTGTTTTTTTTGAACTCTCCTCCTTCAGGCTCCTTTTCTTTACT
TTTTGCCCTACTTAACTGTCTGAAAAAATAAAATGCCTTTACTCCCAGTA
CTAAGGAGGCAGGGGCAGGTGGATCTCTGTTAGTTTGATGCCATCCTGTT
CCATGAGAAGGGATTCATTCCCAGCACTGATTAGGTGACCAAGAGCAAGA
GACTAGATAGCTCAGAGCCCCGGAGTATAGTTAATGTAAAACTGCTATCT
TTAGATTCTTAAAGTTCATGAGAAATACCGTAATATTATCAATTTTCCTT
GATAAAATCCTAGGCTTAAAATTTACATCCAAGCTTGTGCGATGAAC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGTGGAATACCGAATGGCTGA
GAAGCACCTGAAAAAATATTCACCATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCGTAAGATTCCACCTCACACCAGTCAGAATGGCTAAGATA
AAAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAAC
ATTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCTGTTCCTCAGAAATCTGGATATAGTACTACTGGAGGATCCT
GCAATACCTCTCTTGTTTATATATCCAGAAGATGTCCCAACAGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAACCTTATTTATAATAGCCAGAA
GCTGGAAAGATCCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATTTACACAAATGAGTACTACTCAACTACTAAAAAGAATTTATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGCGTATCATCCTGAGTG
AGGTAACCCATTCAAAAATGAACTCACACCATATGTACTCACTGATAAGC
GGATATTAGTCCCAAAATCTTAGTATACCCCAGATTTAAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_k13.b1 MSMg01no067_k13.b1 CHROMAT_FILE:
MSMg01no067_k13.b1 PHD_FILE: MSMg01no067_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:49 2005
         (312 letters)



>mm_chr18_85706896_85707607
          Length = 712

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttgtttctttcttgttgttcctatcttctaagtgctagtagtgtctttcatct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttgtttctttcttgttgttcctatcttctaagtgctagtagtgtctttcatct 263

                                                                       
Query: 64  ttgtccctatctgcctccatttatgattcgctctactctcttctctttctgccccctctc 123
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgtccctatctgtctccatttatgattcgctctactctcttctctttctgccccctctc 323

                                                                       
Query: 124 tgtgtctctgtgccctgcctttcatctttctttctccacctttgtctcttttattctttc 183
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgtctctgtgccctgccttccatctttctttctccacctttgtctcttttattctttc 383

                                                                       
Query: 184 agtgtccttcctatcccatgtcttagtcatggtgtatacttgtatgcctacatgtaggct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtgtccttcctatcccatgtcttagtcatggtgtatacttgtatgcctacatgtaggct 443

                                                                       
Query: 244 tttcctattttataacactatttaaacaccattgagcctgggaggaaagtgatgagatta 303
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 444 tttcctattttataacactatttaaacaccaaggagcctgggaggaaagtgatgagatta 503

                    
Query: 304 actactgtg 312
           |||||||||
Sbjct: 504 actactgtg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)