BAC Information

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BAC

Clone NameMSMg01-067L06
Chromosome18 (Build37)
Map Location 59,802,238 - 59,802,536
singlet/doubletsinglet
Overlap genenone
Upstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L06.T7 (MSMg01no067_l06.b1)MSMg01-067L06.TJ (MSMg01no067_l06.g1)
ACCAG292375AG292376
length701681
length of high quality
(start - end)
299 (118 - 416)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no067_l06.b1 PHD_FILE: MSMg01no067_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:53 2005CHROMAT_FILE: MSMg01no067_l06.g1 PHD_FILE: MSMg01no067_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATCCTA
CCAGTTTGATGAGCCATTTGTTTTCATTTATGGGTGGTAAGTAGATGAAA
AGGATTTCTTACTGCTAACCAGAAGGAGATGGGTTGGAGTTAACAATAAT
GGAAGGCTGTCAATAGTATAGTTTAACAATAGAATATTTGAAACAAATAC
AGGCAAGAATATGAAACGATACCCGCTGTTATTTGAATAGAGAATTGGCT
GTTTTAATTTGCATGGATGTGGAGGCTAATTACTTTATTTTGGGCTACCT
TTATCCTGCTAAGTAGTCATTGTTTGTCTATGTCTGTGTCAGCATCATAA
TCCTTATACTGATAGATACAACCCCTTGGAGAACTACTAATTCACTATAG
TAGTGGCTTCCACCAACACCAAAGCTAAAACTGTTATTATATAGATAGCA
TCTTAGGCCTAGAGAAAATCTTCATCCCATATTGTGGTAACCACCTGCCT
GGTATCCTCACCAATGTATTTTAAACTTTACTTGATGTGTGACTGTGATG
GTTTGTATATTCCCTGGACCACGAAGTGTTCACGATTTGGAAGGCTTGGC
CTTGCTAGAAATACGTGTGACCTTGTTTGGACTAACGCGTGTCCCTTGTT
GCTTTCTTATTTAATCACCCTCCTTTCTCACTTGCCTGTAAATTCTACCT
T
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAACTACATTGAGATATATGAGACCCT
GTCTCAAAAAATATTCTTGGTTGTAGACTGGTCAGTGGAACAGAAAGTGC
TTTAGAGATAAATTAACATATTTATAAATATTGAGTTTCTTATAAAGGTG
AATTTCAAAGTGGGGGAATAAATATGTTTCTAAAAAATTTAAACTTTAGG
GCAATTAGATTCCAGATAAAAAAAGTAACTATACATTTTCTTTCTCTATA
CTGTATTCAAAATCAAATTTATGATAGTAATAAAGATGTCAAGATAAATA
ATAATGCATCTGTTTTTTAATACATGAAGTTTTCCTTTCTTGGGGGATGG
ATAAACTATCATAATGGGCCACACAAAGAATCAAATACAAGCATGATGTA
TTAAAAATATTGAAATCAGTGAAATTGTTCATGAATAATGTTTAAGTCAG
TACAGCCAAGATGCATAATGGCTGAAGATATTTTCAAAACACACATTGCA
GAGAATCTTTCCCCAAGATTATAGAAAGAAATTGTACAGAATATTATGAG
AAAATGATATGTACCCCAATAGGAAGATAGGAAAATATTTGAACAATTCC
CTTACAAGAACATTGTAATATGTCCCTCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l06.b1 MSMg01no067_l06.b1 CHROMAT_FILE:
MSMg01no067_l06.b1 PHD_FILE: MSMg01no067_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:53 2005
         (299 letters)



>mm_chr18_59802038_59802736
          Length = 699

 Score =  493 bits (255), Expect = e-144
 Identities = 288/299 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   accagaaggagatgggttggagttaacaataatggaaggctgtcaatagtatagtttaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accagaaggagatgggttggagttaacaataatggaaggctgtcaatagtatagtttaac 260

                                                                       
Query: 61  aatagaatatttgaaacaaatacaggcaagaatatgaaacgatacccgctgttatttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 261 aatagaatatttgaaacaaatacaggcaagaatatgaaacgatacccactgatatttgaa 320

                                                                       
Query: 121 tagagaattggctgttttaatttgcatggatgtggaggctaattactttattttgggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 321 tagagaattggctgttttaatttgcatggatgtggaggctaattactttgtcttgggcta 380

                                                                       
Query: 181 cctttatcctgctaagtagtcattgtttgtctatgtctgtgtcagcatcataatccttat 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | 
Sbjct: 381 cctttaccctgctaagtagtcattgtttgtctatgtctgtgtcagcatcatcatcctcag 440

                                                                      
Query: 241 actgatagatacaaccccttggagaactactaattcactatagtagtggcttccaccaa 299
           ||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 441 actgatagataaaaccccttggagaactattaattcactatagcagtggcttccaccaa 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)