BAC Information

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BAC

Clone NameMSMg01-067L13
Chromosome18 (Build37)
Map Location 87,622,027 - 87,622,337
singlet/doubletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972, LOC623177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067L13.T7 (MSMg01no067_l13.b1)MSMg01-067L13.TJ (MSMg01no067_l13.g1)
ACCAG292388AG292389
length700732
length of high quality
(start - end)
327 (45 - 371)273 (75 - 347)
definitionCHROMAT_FILE: MSMg01no067_l13.b1 PHD_FILE: MSMg01no067_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:54 2005CHROMAT_FILE: MSMg01no067_l13.g1 PHD_FILE: MSMg01no067_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTAAATATTGCTTCTCATTTTATAAATCTGTCTTAATTCAAAGTT
AGTATCAACTTTTTATCCTGGCTCAGTCTATGGAGATGCTGACTGACAAC
ACTCTTCGCTGATTGAAGAATCATAGGCAATATCAGAGCACTGATTATTG
TGTGTATTGTTTTATTGGATTTGTTAGTGATTTTTTTTTAACTTTCTTAA
CAAAGGCTTCTAGTATCTCGTTGATCTAAGTGAACAAACCCTAGTAGAAT
ATGAGTTTACAGTAAACAATAGAACCATGAGGAGATTCCTAAAGTCTCTG
TGTATCCAATATTTTCCTCTGCGCTCAAGCTGCCTAATCTGTCAGGAATA
AGATCAGAGAGATCATTCTTCATCATGCCAGACATAGAAAAATAGAAAAT
ATAATAAATGAGTGACTCACACCAGCCCCTGAAATATTCCCTTACAATGT
GCTGTAAGATTTGACTCTTTTCTCTGCCTGTCTGATCAGTTATCTGAAGT
AAAATCTAGGAAGAAAAGATGACTTGTCTGTAATTTCTTTTATGGTTTCC
TTTATCTAGCATCAAATGCAGTGCTCAGAAACTGTTGTGTGTTGTTAGAT
GAACCTTCACATGTATATTACCCTGCTGATTGGGCCCCCGCAAAATATCA

CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTGCACAGAAAA
ACCCTGTCTCAAAAACAAAAAACAAAAAACAAAACAAAACAAAACAAAAC
TTAAAAACAAACAAACAAAACAAAAACAAAAACAAACAAACAAAAAACGG
AAAGCACTCACCAAGGACAGCCTTTGGTGGTCTTTGGCACTCAGCTTGGA
AACAGTGATACCAAAACTATTAAGGGGAATGCCAGGGCCAGAAAGTGGGA
ATGGATGGGTTGGTGAGCAGGGTAATGGGAGAGGGGATAGGGGTATCCCT
TTCTTTTTTTCTTTTTTTCCCCCCCCCCCCCCTCCCTGTTTTTTCTTTCT
CCTCTTTATTCCTTTCTCTATTTAAAAAAAAAAAAAAACTTTCGGGGTTG
GTGCACGCTTTTTTCTTTTCCCTCTTATATCTTTCCCCCATATTTAACCC
CTCTTTTCATATTTCTTACCCCCCCTTTATTTCCTCCTCCCTCTCTTATC
TATCACTCCCTATTTTTTCCCCCATTACACATTCACACCCCCTATCCTCA
TTTTCCTCCCACCTTTTTTCCCCCATCCCTCTTTTTTCCCTCTTCTTCCC
CTCCCCTATTTTTCTTTTCCCTTCGCCCCTTTTTCTCCCCTATCCTCTTT
ATTTTTTCCTTCACCCTTTTTTTTTATCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_l13.b1 MSMg01no067_l13.b1 CHROMAT_FILE:
MSMg01no067_l13.b1 PHD_FILE: MSMg01no067_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:54 2005
         (327 letters)



>mm_chr18_87621824_87622549
          Length = 726

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattaaatattgcttctcattttataaatctgtcttaattcaaagttagtatca 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattaaatagtgcttctcattttataaatctgtcttaattcaaagttagtatca 263

                                                                       
Query: 64  actttttatcctggctcagtctatggagatgctgactgacaacactcttcgctgattgaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 actttttatcctggctcagtctatggagatgctgactgacaacactcttcgctgattgaa 323

                                                                       
Query: 124 gaatcataggcaatatcagagcactgattattgtgtgtattgttttattggatttgttag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaatcataggcaatatcagagcactgattattgtgtgtattgttttattggatttgttag 383

                                                                       
Query: 184 tgatttttttttaactttcttaacaaaggcttctagtatctcgttgatctaagtgaacaa 243
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgattttttttca-ctttcttaacaaaggcttctagtatctcgttgatctaagtgaacaa 442

                                                                       
Query: 244 accctagtagaatatgagtttacagtaaacaatagaaccatgaggagattcctaaagtct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 accctagtagaatatgagtttacagtaaacaatagaaccatgaggagattcctaaagtct 502

                       
Query: 304 ctgtgtatccaa 315
           ||||||||||||
Sbjct: 503 ctgtgtatccaa 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 726
Length adjustment: 9
Effective length of query: 318
Effective length of database: 717
Effective search space:   228006
Effective search space used:   228006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)