BAC Information

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BAC

Clone NameMSMg01-068D21
Chromosome18 (Build37)
Map Location 23,180,474 - 23,180,969
singlet/doubletsinglet
Overlap geneNol4
Upstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
Downstream geneLOC100040579, LOC665797, Dtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068D21.T7 (MSMg01no068_d21.b1)MSMg01-068D21.TJ (MSMg01no068_d21.g1)
ACCAG292782AG292783
length723729
length of high quality
(start - end)
496 (60 - 555)489 (66 - 554)
definitionCHROMAT_FILE: MSMg01no068_d21.b1 PHD_FILE: MSMg01no068_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:36 2005CHROMAT_FILE: MSMg01no068_d21.g1 PHD_FILE: MSMg01no068_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGCGCTATACACTCCTATAGGGTGCGATACGCGGAATTCACTCAGTCTGA
GTGTCTGTATTTGACTCTGCTTTGTCCCTCTCTGCTGAGATCATCTATCT
TTGCATTCATCACAGGAGAGTTTATATCTCCTACATAAAATATGAGAATT
GCAGCTCTTAAAATCTTTTATAATACCAACATCTAATCCAACTCCGAGTT
GGTAGGGGGTAATTATTTTGCACTTTAAAATTTGTCTAATTTTCAGATGA
GATAACAACCTCAGGTTATCTTCTAAACATTTTGAATGCTAGGTTGTCAG
ACTGTAGTCTTAATATAATTGCCCTAGTGTTGAGTGATATGTCTTGATAT
CACATACAGTATCCCTTCGGTGTCTCACTCTGGCCTTCTTAACAGTGGTT
TCAACTTCAGTTCACTCTTTTCAGTCCACTGAGCTTGCTTGCATCTATTC
TGCTGGTGTGTTTGAGGGGATAGTCTGGAACTTATGCAATGGTTTCTATC
ATTTCAAAGAATTTGCTCTGCTGCTTTGAGTATGCTCTGCAGATTCATAA
CATGCATGTCAATTCCATTTACACCTACAGTTAGGGGGTATTCTCTTGTG
GATTTATCTCACACTGTGCAGATCTCCAGCACATGCACCTGTGTTCTGAC
CCCTTGACTTGAAAACTTTGGTTCTACTTGTGGTCCTTATATCTGTACTG
CTTCCTAAACCTGAAGCCCTACG
GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCACTTCTTTGTTCAGTTCTGAGCCCCATTATTTAATGG
GGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTG
GATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATC
TGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAAC
TTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAA
GCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAG
GCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGT
GAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTAT
GGATCGATTCGCATTCTTCTACAGGATAACAACCAGTTGTGCCAGCACCA
ATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGT
CGAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATT
CTATTCCATTGGTCTACTTGTCTGTCTCTATACCAGTATTATGCAGTTAA
CTTTCTTTTGTCTGTTTTCAGTGTTTTACCTGGAGTGGACAGTATTTTTT
TTCCTTCCATTCTTCCCGGAAGTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_d21.b1 MSMg01no068_d21.b1 CHROMAT_FILE:
MSMg01no068_d21.b1 PHD_FILE: MSMg01no068_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:36 2005
         (496 letters)



>mm_chr18_23180274_23181169
          Length = 896

 Score =  920 bits (476), Expect = 0.0
 Identities = 491/496 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgactctgctttgtccctctctgctgagatcatctatctttgcattcatcacaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgactctgctttgtccctctctgctgagatcatctatctttgcattcatcacaggaga 260

                                                                       
Query: 61  gtttatatctcctacataaaatatgagaattgcagctcttaaaatcttttataataccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttatatctcctacataaaatatgagaattgcagctcttaaaatcttttataataccaa 320

                                                                       
Query: 121 catctaatccaactccgagttggtagggggtaattattttgcactttaaaatttgtctaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 321 catctaatccaactccgagttggtagggggtaattattttgcactttaaaatgtgtttaa 380

                                                                       
Query: 181 ttttcagatgagataacaacctcaggttatcttctaaacattttgaatgctaggttgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcagatgagataacaacctcaggttatcttctaaacattttgaatgctaggttgtca 440

                                                                       
Query: 241 gactgtagtcttaatataattgccctagtgttgagtgatatgtcttgatatcacatacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactgtagtcttaatataattgccctagtgttgagtgatatgtcttgatatcacatacag 500

                                                                       
Query: 301 tatcccttcggtgtctcactctggccttcttaacagtggtttcaacttcagttcactctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcccttcggtgtctcactctggccttcttaacagtggtttcaacttcagttcactctt 560

                                                                       
Query: 361 ttcagtccactgagcttgcttgcatctattctgctggtgtgtttgaggggatagtctgga 420
           | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 561 tacagtccactgagcttgcttgtatctattctgctggtgtgtttgaggggatagcctgga 620

                                                                       
Query: 421 acttatgcaatggtttctatcatttcaaagaatttgctctgctgctttgagtatgctctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttatgcaatggtttctatcatttcaaagaatttgctctgctgctttgagtatgctctg 680

                           
Query: 481 cagattcataacatgc 496
           ||||||||||||||||
Sbjct: 681 cagattcataacatgc 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)