BAC Information

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BAC

Clone NameMSMg01-068H04
Chromosome18 (Build37)
Map Location 16,871,685 - 16,872,035
singlet/doubletsinglet
Overlap geneCdh2
Upstream geneChst9, LOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
Downstream geneLOC665519, 1700001G01Rik, 4921533I20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068H04.T7 (MSMg01no068_h04.b1)MSMg01-068H04.TJ (MSMg01no068_h04.g1)
ACCAG292940AG292941
length692688
length of high quality
(start - end)
275 (54 - 328)348 (84 - 431)
definitionCHROMAT_FILE: MSMg01no068_h04.b1 PHD_FILE: MSMg01no068_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:53 2005CHROMAT_FILE: MSMg01no068_h04.g1 PHD_FILE: MSMg01no068_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTTATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTGGGATTAAAGGCCTACACTATCACCTGGTTGGATCT
TGATTTTTTTTATTAGATATTTTCTTTATATCCATTTCAAATGCTATCCT
GAAAGTTCCCTATATCCTCCCCCTCCCCCCATCCTGCTCCTCTACCCACC
CACTCCTGCTTCTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGT
TTGCAATACCAAGGGGCCTCTCTTCCCAGTGATGGCCAACTAGGCCATCT
TCTGCTACATATGTAGCTAGAGACATGAGCTCTGGGGGTACTGATTAGTT
CATATTGTTGTTCCACCTATATTTTTTGCAGACCCCTTCAGCTCCTTGGG
TACTTTCTCTAACTTCTCCATTGGGGGCCCTGTGATCCACCTTATAGATG
ACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCATAC
GAAACAGTTATACCTGGTTCCCTTCAGATAAATCTTGTTGTCTTGTGCAA
CTACGCTCTGTTCTTGGTGCTTGATTATGCGATGCACCCCCGTTGGCCTT
ATTCTCCGGGTTAGTCTTTCCCACTAGACTTAGTTTCCTTACTCTTGTAT
TCTGTATATTCTTTTTCTGCTTCATTTTGTTTCTTCTCTCTC
TTTNAAAAACGATGATANTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTCATTGCAACATGT
GAAAAAAAAAGTTCACTTGCTCATCCTTCACCCCTGTCAGAGGCTTTGCC
GATGTCATTGAGAAAGATTGTATATACAACAAAATAATCAGTAACAAATG
AGATGTTTGCCTCAGATAGCCTCACACCCTGTCAAAATCCGGTCCCTCTA
ATATCTGGGAGACATTGGTCATGGCTCTAAATAGCAGACAAAGCTAGACA
ACTCCAAATGTATGGTTTTGCCTTTTGCTCATGGCCAGGCCAGACCAGGG
AGGCCTCCCTCCTTGAATGGTTTTTTGTGTTCACCCCGTTCCCAGCCTAT
GTTCTCATCTCATTAGAATTTCTGGTTCCTCTGAACTCACAAAGTTCCCT
GCACCTTCTTTTGTATTGCACAAAAGATGGTAATTTACTTCTAATTAACG
GAACTGAGTCATAATGAGTTCTTTTCTCTTATACAGCATTTGAATGTCCA
AAATAACCCATAGATATTGGTCTTTTGAGTCTTGCTCCTGCCTAATGTTC
TATAACACAATGTTCTCATTCGAGTCCCCTGCTTTGCATACTGTCACAGG
GTTGGAGGTTATCCACATTGCGAATATCTTTATCTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_h04.g1 MSMg01no068_h04.g1 CHROMAT_FILE:
MSMg01no068_h04.g1 PHD_FILE: MSMg01no068_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:53 2005
         (348 letters)



>mm_chr18_16871485_16872235
          Length = 751

 Score =  598 bits (309), Expect = e-175
 Identities = 340/351 (96%), Gaps = 3/351 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttcattgcaa-catgtgaaaaaaaaa--gttcacttgctcatccttcacccctgtcag 57
           ||||||||| || |||||||||||||||  ||||||||||||||||||||  | ||||||
Sbjct: 201 ctttcattgtaaacatgtgaaaaaaaaaaagttcacttgctcatccttcagtcatgtcag 260

                                                                       
Query: 58  aggctttgccgatgtcattgagaaagattgtatatacaacaaaataatcagtaacaaatg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggctttgccgatgtcattgagaaagattgtatatacaacaaaataatcagtaacaaatg 320

                                                                       
Query: 118 agatgtttgcctcagatagcctcacaccctgtcaaaatccggtccctctaatatctggga 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgtttgcctcagatagcctcacaccctgtcaaaatccggtccctctaatatctggga 380

                                                                       
Query: 178 gacattggtcatggctctaaatagcagacaaagctagacaactccaaatgtatggttttg 237
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacactggccatggctctaaatagcagacaaagctagacaactccaaatgtatggttttg 440

                                                                       
Query: 238 ccttttgctcatggccaggccagaccagggaggcctccctccttgaatggttttttgtgt 297
           |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 441 ccttttgctcatggccaggccagaccagggaggcctccctccttgaatggcttcttgtgt 500

                                                              
Query: 298 tcaccccgttcccagcctatgttctcatctcattagaatttctggttcctc 348
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaccccgttcccagcctatgttctcatctcattagaatttctggttcctc 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 751
Length adjustment: 9
Effective length of query: 339
Effective length of database: 742
Effective search space:   251538
Effective search space used:   251538
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)