BAC Information

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BAC

Clone NameMSMg01-068J08
Chromosome18 (Build37)
Map Location 18,707,071 - 18,707,506
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068J08.T7 (MSMg01no068_j08.b1)MSMg01-068J08.TJ (MSMg01no068_j08.g1)
ACCAG293044AG293045
length711715
length of high quality
(start - end)
233 (137 - 369)431 (81 - 511)
definitionCHROMAT_FILE: MSMg01no068_j08.b1 PHD_FILE: MSMg01no068_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:03 2005CHROMAT_FILE: MSMg01no068_j08.g1 PHD_FILE: MSMg01no068_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTCAGGATCTGTTGTTATGTCTCCCTTTTCATTTCTGATT
TTGTTAATTAGGATGCTTTCCCTGTGTCTCTTCAGTGAGTCTGGCTAAGG
GTTTATCTATCTTATTGATTTTCTCAAAGAACCAGCTCCTGGATTGGTTG
ATTCTTTGAATATTTCTTCTTGTTTCCACTTGGTTGTTTTCGCCCCTGAG
TTTGATTATTTCCTGCCATCTACTCCTCTTGTGTGAATTTGCTTCCTTTT
GTTCTAGAGCTTTTAGGTGTGGTGTCAAGCTGCTAGTGTATGTTCTCTCT
AGTTTCTTTTTGGAGGCACTCTTTTTTTATGAGCCCCCCTCCTACAATTG
CTCTCCTTGTGTCCCATAAGTTTGGGTATGTTGAGGCTTCATTTTAATTA
AGCTCCGGAAAGGCCTTAATTTCTTTCTTTATTCCTTCCTTGATCTTTGA
GAAGAGCGTTGATCAGTTTCCACGCGAATGTTGTCTTTCTATTAATTATT
TTGCTATTAAAGATCAGCCTTAGTCCTTGGTGATCTGTTATGATTGTTGC
GTCATTTTCAATATTTCTGATTATGCTGTAGGCTTGTTTTGTGACCATCT
ATTGCTTTCCTTTTGCAGAAATTAATTTGATGTGTTGATTATATGTTATT
TTCTTTTGTTT
NAATACGATGCTAGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCATTCCAAATCCATCCTG
AATGTCATCATAGATAAGTTTGTGTGCCTGTCCGTATAGATGAGTGTATA
TGCATGTAGATTGCCTGTACTTTGGAAATATATAAATGTAAATGTTATCC
TCTCTTGTGGAGTTGAATTGTTTGATTTCTACAAAATACGAGTTTCTATT
TCTCTTAATTATCTGTGAAAATTCCTGGTTTTCTTACAGTGATGAAATTT
AAAAAGAAAATAGAAGCACACAGTCAGAGTGCTATCCTATTAGAAGCAAT
ATCGAGATTGATGTACCTATTATTATGAAATGCCAAAAGATACCATCTAC
TTCTTAGCAACAAGGACAGAGTCATAGAGTATTCACTCTCACAAACCAGA
TTCTGTTTGTCCAGGTCTTTGAGACTACAAAGATCTAAGATGCTCTCAGC
CCCTTAAATTCTAGGTAAGATTCTTAAATTGAAAGTGGGGGAAAACATAA
AATGTTTTTTGATTTTACAATACCTAAGATAATTTCAAAATCATGTATGC
AATGGATATTACATTATTTTCATTCTACATCTAAAAGTGTTCTATTCCTA
TTGAAACTCATTAATTTCATTGTAAAAAAACAATCTTTTTAATACTTGTT
TAACCTTATCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_j08.g1 MSMg01no068_j08.g1 CHROMAT_FILE:
MSMg01no068_j08.g1 PHD_FILE: MSMg01no068_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:03 2005
         (431 letters)



>mm_chr18_18706871_18707706
          Length = 836

 Score =  770 bits (398), Expect = 0.0
 Identities = 425/436 (97%), Gaps = 5/436 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcattccaaatccatcctgaatgtcatcatagataagtttgtgtgcctgtccgtataga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 ctcattccaaatccatcctgaatgtcatcatagataagtttgtgtgcctgtatgtataga 260

                                                                       
Query: 61  tgagtgtatatgcatgtagattgcctgtactttggaaat-atataaatgtaaatgttatc 119
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tgagtgtatatgcatgtagattgcctgtactttggaaataatataaatgtaaatgttatc 320

                                                                       
Query: 120 ctctcttgtggagttgaattgtttgatttctacaaaatacgagtttctatttctcttaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctcttgtggagttgaattgtttgatttctacaaaatacgagtttctatttctcttaat 380

                                                                       
Query: 180 tatctgtgaaaattcctggttttcttacagtgatgaaattt----aaaaagaaaatagaa 235
           |||||||||||||||||||||||||||||||||||||||||    ||||| |||||||||
Sbjct: 381 tatctgtgaaaattcctggttttcttacagtgatgaaatttaaaaaaaaaaaaaatagaa 440

                                                                       
Query: 236 gcacacagtcagagtgctatcctattagaagcaatatcgagattgatgtacctattatta 295
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 441 gcacacagtcagagtgctatcctattagaagcaatatcgagattgatgtacctattagca 500

                                                                       
Query: 296 tgaaatgccaaaagataccatctacttcttagcaacaaggacagagtcatagagtattca 355
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaatgccaaaagataccatctacttcttagcaacaaggacagagtcatagagtattca 560

                                                                       
Query: 356 ctctcacaaaccagattctgtttgtccaggtctttgagactacaaagatctaagatgctc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctcacaaaccagattctgtttgtccaggtctttgagactacaaagatctaagatgctc 620

                           
Query: 416 tcagccccttaaattc 431
           ||||||||||||||||
Sbjct: 621 tcagccccttaaattc 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 836
Length adjustment: 9
Effective length of query: 422
Effective length of database: 827
Effective search space:   348994
Effective search space used:   348994
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)