BAC Information

Click to search

BAC

Clone NameMSMg01-068P23
Chromosome18 (Build37)
Map Location 44,088,136 - 44,170,313
singlet/doubletdoublet
Overlap geneSpink5
Upstream genePpp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
Downstream geneEG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883, Ythdc2
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068P23.T7 (MSMg01no068_p23.b1)MSMg01-068P23.TJ (MSMg01no068_p23.g1)
ACCAG293360AG293361
length708715
length of high quality
(start - end)		535 (37 - 571)641 (75 - 715)
definitionCHROMAT_FILE: MSMg01no068_p23.b1 PHD_FILE: MSMg01no068_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:37 2005CHROMAT_FILE: MSMg01no068_p23.g1 PHD_FILE: MSMg01no068_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,088,136 - 44,088,666)(44,169,673 - 44,170,313)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACT
GCTGGCTACCCTTAGATGAGTCTTTCTATCTAAACTAGTCTAATAGAAAA
TCCCCCAACAGACATGGCTAGACATTTGTCTTCTAGATGATTCTAGATCT
GGTCAGGTTAACAGCCAATAGTAAGCATTATTAGGTCCCTAGAAATTTAC
ATCTCGAAGCAAATACAATGGCATGACTTTGTTAGTGCATCCCTCTTAAC
TTGAGATCTGAGCTACTTTATGCTTTTAAGATTTGGAGTAAGTTAGTTCA
GGCATCAGAGTCGATGTTTCTAATTTTAACATGGAGATGGTAGTACTGTA
TAGACTTACTGTGAACCCTTAGCCACATGGTAGTTGCAACACATTTCTTT
CTATGTTCTAAAGAGGTTTTCTTTAAGCAGTTGAACAGAGTAGGAATGCT
TTATGAGACAACATGTAACAGGAAGATAAAATAACTCCAGGGAGGGGTTG
CTACATACACACAATGGAATATTATTTGGTTATCAAACTAGAAAATCCTG
CTATGATATAACATGAATAAAGTTTGAAGACACTATAGTGTGTGAAAAAA
GCTAATTGTGGACAAACCCAGTTCGACATCACTTATATGAAGTCTGTACA
GTAACAGAACTGATAGAAAGAATTTCAGTTTTCAGTTCTGAAACACAGGG
AAGTAGAG

CCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCCTCGAA
CTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTG
CACCATAACGCCTGGCTTGATGTAGCATTTCTTTGTAAGCTAACTTTGTA
AAGTAATGGGTTGGTTTTAGAATGTCTGTAACTGTCTGCTACCTCATGGT
CCTTTTATATTGTCTCCACCATGAGGAATCCTCCCTCATTAGAACCACCT
CGTTCACTGTGGTCCAGCCATGACTCCCATGGATGCATCTCTATTAATAA
AGCTCATTTTCTGACAGGTAGTTTCATGCCAGCTTCCAAGCCATCATCTA
TCTCTCCATAACATGAACCTGCCAACTTCACATATTAATATGTCTCAAAT
ATTACCTCCTTATCGCTCTTGTTTGTTTCAGTGTTTCTCTTCTCTTCATC
CTCTTTCTTTTTCTTTTCAGCAGCTTCTTTTTCCCTGAGAGAAGGGATTG
AAAGAAACATTTCTACTAAAGTGAATAAATATCTCATTAGTTATAGGACT
CACTTCTAAAACAGATGCTGCGCTTCTCAAACTGCTGCAACATGGTTATT
ATACTCTCTGGACCCCCAGCCCAACCTCTGTTTTGGAAAACACTTACAGT
CTTTCCTTACACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_p23.b1 MSMg01no068_p23.b1 CHROMAT_FILE:
MSMg01no068_p23.b1 PHD_FILE: MSMg01no068_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:37 2005
         (535 letters)



>mm_chr18_44087932_44088866
          Length = 935

 Score =  988 bits (511), Expect = 0.0
 Identities = 526/531 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactgctggctacccttagatgagtctttctatctaaactagtctaatagaaaa 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattgctggctacccttagatgagtctttctatctaaactagtctaatagaaaa 264

                                                                       
Query: 65  tcccccaacagacatggctagacatttgtcttctagatgattctagatctggtcaggtta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccccaacagacatggctagacatttgtcttctagatgattctagatctggtcaggtta 324

                                                                       
Query: 125 acagccaatagtaagcattattaggtccctagaaatttacatctcgaagcaaatacaatg 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagccaatagtaagcattaataggtccctagaaatttacatctcgaagcaaatacaatg 384

                                                                       
Query: 185 gcatgactttgttagtgcatccctcttaacttgagatctgagctactttatgcttttaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatgactttgttagtgcatccctcttaacttgagatctgagctactttatgcttttaag 444

                                                                       
Query: 245 atttggagtaagttagttcaggcatcagagtcgatgtttctaattttaacatggagatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atttggagtaagttagttcaggcatcagagtcgatgtttctaattttaacatggagatgg 504

                                                                       
Query: 305 tagtactgtatagacttactgtgaacccttagccacatggtagttgcaacacatttcttt 364
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 tagtactgtatagacttactgtgaaccctaagccacatggtagttgcaacacatttcttt 564

                                                                       
Query: 365 ctatgttctaaagaggttttctttaagcagttgaacagagtaggaatgctttatgagaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctatgttctaaagaggttttctttaagcagttgaacagagtaggaatgctttatgagaca 624

                                                                       
Query: 425 acatgtaacaggaagataaaataactccagggaggggttgctacatacacacaatggaat 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acatgtaacaggaagataaaataactccagggaggggttgctacatacacacaatggaat 684

                                                              
Query: 485 attatttggttatcaaactagaaaatcctgctatgatataacatgaataaa 535
           ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 685 attatttggttatcaaattagaaaatcctgctatgatataacataaataaa 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no068_p23.g1 MSMg01no068_p23.g1 CHROMAT_FILE:
MSMg01no068_p23.g1 PHD_FILE: MSMg01no068_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:37 2005
         (641 letters)



>mm_chr18_44169349_44170389
          Length = 1041

 Score = 1201 bits (621), Expect = 0.0
 Identities = 636/641 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcccgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 actttgtagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcccgagtgc 906

                                                                       
Query: 61  tgggattaaaggcgtgcaccataacgcctggcttgatgtagcatttctttgtaagctaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tgggattaaaggcgtgcaccataacgcctggcttgatgtagcatttctttgtaagctaac 846

                                                                       
Query: 121 tttgtaaagtaatgggttggttttagaatgtctgtaactgtctgctacctcatggtcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 tttgtaaagtaatgggttggttttagaatgtctgtaactgtctgctacctcatggtcctt 786

                                                                       
Query: 181 ttatattgtctccaccatgaggaatcctccctcattagaaccacctcgttcactgtggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 ttatattgtctccaccatgaggaatcctccctcattagaaccacctcgttcactgtggtc 726

                                                                       
Query: 241 cagccatgactcccatggatgcatctctattaataaagctcattttctgacaggtagttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cagccatgactcccatggatgcatctctattaataaagctcattttctgacaggtagttt 666

                                                                       
Query: 301 catgccagcttccaagccatcatctatctctccataacatgaacctgccaacttcacata 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 665 catgccagcttccaagccatcatctatctctccataacgtgaacctgccaacttcacata 606

                                                                       
Query: 361 ttaatatgtctcaaatattacctccttatcgctcttgtttgtttcagtgtttctcttctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttaatatgtctcaaatattacctccttatcgctcttgtttgtttcagtgtttctcttctc 546

                                                                       
Query: 421 ttcatcctctttctttttcttttcagcagcttctttttccctgagagaagggattgaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttcatcctctttctttttcttttcagcagcttctttttccctgagagaagggattgaaag 486

                                                                       
Query: 481 aaacatttctactaaagtgaataaatatctcattagttataggactcacttctaaaacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aaacatttctactaaagtgaataaatatctcattagttataggactcacttctaaaacag 426

                                                                       
Query: 541 atgctgcgcttctcaaactgctgcaacatggttattatactctctggacccccagcccaa 600
            || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttgatgtgctgctcaaactgctgcaacatggttattatactctctggacccccagcccaa 366

                                                    
Query: 601 cctctgttttggaaaacacttacagtctttccttacacatg 641
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cctctgttttggaaaacacttacagtctttccttacacatg 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |