BAC Information

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BAC

Clone NameMSMg01-069E07
Chromosome18 (Build37)
Map Location 40,179,096 - 40,179,337
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939
Downstream geneYipf5, Kctd16, EG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069E07.T7 (MSMg01no069_e07.b1)MSMg01-069E07.TJ (MSMg01no069_e07.g1)
ACCAG293565AG293566
length683697
length of high quality
(start - end)
306 (26 - 331)241 (69 - 309)
definitionCHROMAT_FILE: MSMg01no069_e07.b1 PHD_FILE: MSMg01no069_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:59 2005CHROMAT_FILE: MSMg01no069_e07.g1 PHD_FILE: MSMg01no069_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCGCTATACGACTCCTATAGCGAGAGGATCCGCGGAATTCTCCTAGATC
GCCTCTGGAAGTGTTATCTTACCAACTCCATCCATTGACCTTGGCCCTGT
TCCTTGCCTTCAGATTTCCCCTGGCTCCTGCTGTATTCAGAGATGAGCAC
AAGCTCTGCAAAATCCCATTGCTTTGCCTCTTACACCTATTGTGATTTTG
CTGAATGAAGTCTCCTCTGACTGTGCTTTAAAATTGTCATTGAATGAATT
TTCTTTAACAGCGTGCAGCTTTTATGTGTTGTCCATTGTGACCGGGGACA
TTTCTAAGCACTCAATCATCAGGGTTTACAGATAGAGGGTAATCTTTTTG
TTGCTCCCTCCCCCCCACTCAGCTGGAAGTCCCAGTATGAAGCAGTTCTT
ATAAACCCCTTCAAAAATGCTATCTTTTGTAGTGATATATTCTGAATAAT
CCCACATGAGACACCAATCAGAATCATAATGCATCCTGCATTTTTGACGA
ATGGCCTACCCCTCTCGATATTCACCCTCCTAAATTTAATTCGTTCTAGT
TGATTTTTGACTCTCTACGTTATCAAATTTCCAATACCTCTTACATTCGC
TTTTACCTAGACCCCTCCTTCCTTCATACCATTGACCTTTTCCCCTTTTA
ATATCCTTCCACTGTTTCTCGACTCGGATCTGC
TCATGCTGTGTTAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTCCTCTACCACATCGAGGGTAATATTAGGA
CACAGTGGGCTGCACGAGTGTAGGAGGGAAGATGGACTGTGCAATATTAT
GATACTTAAGGATATGCTAGGGGATGGGGCTGGAGAGATGGCTCAGCAGT
TAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAAC
CACATGGTTGTTCACAACCATCTGTAATTGGCTCCAATGCCCTCTTCTGT
TGTTTCTGATGAGTTTGTATGCTCACATATGTTAAATAATTAAATAAATA
CTTTTTTTTTTACCTCCCCCCCTACTTAAATATATATCGGTACCGCTAGA
TGCTGTCCATGTCCATGCTAAGATATCTACCTGTGATTGGAGGCACGACC
ACTTATGATCATTTACGTGGTCCTATGCCTTTTACTCTTTCTTTTTTTTT
TCTCTACTCTTTCACTATTTGTCATCTGTTCTTCTTTGTTGCTATCACTT
TTGCCCCTTGAGCTTCGGCTTTTTTCTATTATCTCCTATGTCCCCCCGTT
CTCTTTTCCGATCTGTCATTCCTTGCATCCTCCTCCTGTGATCTCCTTCA
TTTTCGCCTTTCTTTACTTTACCACGTTTCCCCTCTTCCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_e07.g1 MSMg01no069_e07.g1 CHROMAT_FILE:
MSMg01no069_e07.g1 PHD_FILE: MSMg01no069_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:59 2005
         (241 letters)



>mm_chr18_40178896_40179537
          Length = 642

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctctacc-acatcgagggtaatattaggacacagtgggctgcacgagtgtaggagg 59
           ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 201 cttcctctaccaacatcgagggtaatagtaggacacagtgggctgcaggagtgtaggagg 260

                                                                       
Query: 60  gaagatggactgtgcaatattatgatacttaaggatatgctaggggatggggctggagag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagatggactgtgcaatattatgatacttaaggatatgctaggggatggggctggagag 320

                                                                       
Query: 120 atggctcagcagttaagagcactgactgctcttccagaggtcctgagttcaattcccagc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggctcagcagttaagagcactgactgctcttccagaggtcctgagttcaattcccagc 380

                                                                       
Query: 180 aaccacatggttgttcacaaccatctgtaattggctccaatgccctcttctgttgtttct 239
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccacatggtggttcacaaccatctgtaattggctccaatgccctcttctgttgtttct 440

             
Query: 240 ga 241
           ||
Sbjct: 441 ga 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space:   146856
Effective search space used:   146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)