BAC Information

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BAC

Clone NameMSMg01-069F02
Chromosome18 (Build37)
Map Location 50,321,131 - 50,321,333
singlet/doubletsinglet
Overlap geneHsd17b4
Upstream geneDtwd2, Dmxl1, Tnfaip8, LOC626721
Downstream geneLOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069F02.T7 (MSMg01no069_f02.b1)MSMg01-069F02.TJ (MSMg01no069_f02.g1)
ACCAG293603AG293604
length767774
length of high quality
(start - end)
318 (105 - 422)194 (132 - 325)
definitionCHROMAT_FILE: MSMg01no069_f02.b1 PHD_FILE: MSMg01no069_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:02 2005CHROMAT_FILE: MSMg01no069_f02.g1 PHD_FILE: MSMg01no069_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTCTCCCCCTTTTTTTCCCCTCNCCTCTCTTTCCCCCCTCCTCTTT
TTCCCCCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACA
GCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATC
CCACTAAAATCAGGGACTAGACAAAGCTGCCCACTTTCTCCCTACCTTTT
CAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGA
TCAAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCA
GATGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACT
CCTAAACCTGATAAACAGCTTTCTTTGATCCCCCCGCCTATAAAATTAAC
TCAAACAAGTCTATGGCCTTTCTCTACACTAAGAATAAACAGGCTGATAA
AGAAATTAGGGAAACAACACCCTTCTCAATAGTCATAAATAACATAAAAT
ATCTCGGCGTGACTCTAACTAAGGAAGTGCAAGATCTGTATGATAATATA
CTTCAAGTCTCTGAACAAAGAATTTATCGAATTATCTCATAAGATGCAAT
GATCTCCCCTGCTCATGGATTGGCCCTGCCTTTTACTGTTATTATCGCCT
TTCTCGCCTAAAATTTTTTTACCTATTCCCTGCCTTCCCTTTCAATTTTC
CCATTCACTCCCTCCCC
TTTTTTCTTTTTTTTTTNNTTTTCTTTTTTTNCCCTCCTTTTCCCCTTCC
CCCNNCNTCTCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAAAAATTCAGACTC
TGCCCCCCCCCCCCCGCCCCAAATGATCAGCAAGATATTGCCAGAGACTC
TGGGCTGTGTTGTTTATCTGTTAGCTGAACTCCTACCATGCAGACACCCA
GGGATAACTGCTTCTTACTGCTCTTGTTTTGGATGTACAGCTTATTAATT
GAATGTTAAGTTCTTTTGATGCAGAGGCTCTTTCATGTGCATTTATTTTT
TGTGATGCTGACGGTGGAACTCAGGACCGTGGGCATGCTGGGAAAGCTCT
GTACACACAGTATAGTTTTTTTTATCCGCCCCCCTTTTAAAAATACAGTG
TTTTAAATTATTTCTTTGAACATGCTGCACATTAATGTAATGTATTGTGA
TAGTATTCACTACATCTCTTCATCTGGTTGCTCCCAGACCATCTTCTGTC
TTCTTTCCCTTCTCTATTCTCTATTTTTTTTTCCCCCTTGGCTCCTTTAT
TGTCCCCCTTCCCGTCCAGCTACCCCGTTTCTTGTTCCTTTTTTCTTGGC
CTTGTTAGCCCTCTGCTTTTCCGTCTTAACCCTTGCCTTACCTTACTCGC
CCCTTTTCTTTTTTTTATACCTTACCGTATCTCCTCTCACCCCCTTTTTC
TTCTTTTCTATTCTCCCACCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_f02.g1 MSMg01no069_f02.g1 CHROMAT_FILE:
MSMg01no069_f02.g1 PHD_FILE: MSMg01no069_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:02 2005
         (194 letters)



>mm_chr18_50320940_50321533
          Length = 594

 Score =  354 bits (183), Expect = e-102
 Identities = 194/203 (95%), Gaps = 9/203 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagaaaaattcagactctgccccccccccccc---------gccccaaatgatcagca 51
           ||||||||||||||||||||||||||||||||||         |||||||||||||||||
Sbjct: 192 tttagaaaaattcagactctgccccccccccccccccccccccgccccaaatgatcagca 251

                                                                       
Query: 52  agatattgccagagactctgggctgtgttgtttatctgttagctgaactcctaccatgca 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agatattgccagagactctgggctgtgttgtttatctgttagctgaactcctaccatgca 311

                                                                       
Query: 112 gacacccagggataactgcttcttactgctcttgttttggatgtacagcttattaattga 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gacacccagggataactgcttcttactgctcttgttttggatgtacagcttattaattga 371

                                  
Query: 172 atgttaagttcttttgatgcaga 194
           |||||||||||||||||||||||
Sbjct: 372 atgttaagttcttttgatgcaga 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)