BAC Information

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BAC

Clone NameMSMg01-069H12
Chromosome18 (Build37)
Map Location 7,972,400 - 7,972,606
singlet/doubletsinglet
Overlap genenone
Upstream geneMkx, LOC664778, Armc4, Mpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121
Downstream geneLOC225134, LOC665132, EG433158, EG545242, LOC665161
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069H12.T7 (MSMg01no069_h12.b1)MSMg01-069H12.TJ (MSMg01no069_h12.g1)
ACCAG293719AG293720
length683761
length of high quality
(start - end)
244 (47 - 290)209 (130 - 338)
definitionCHROMAT_FILE: MSMg01no069_h12.b1 PHD_FILE: MSMg01no069_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:14 2005CHROMAT_FILE: MSMg01no069_h12.g1 PHD_FILE: MSMg01no069_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATTCGGAGAGGATCCGCGGAATTCAGTTATTTTCGTGAGAGTCAGCA
GTATAGCTGAGAAATGAAAGAAGAATGAATGAGGGCAATGATAATGACAT
ATGTGCAGGCCCATCACATTGGAAAAGCAAGATTCAGATCTAAAATCACT
TCTCATGACAATGATAGAGGACTTTAAGAAGGACATAAATAACTCCCTTA
AAGAAGTATAGGAGAACACAGGTAAACAGCCTGAAGCCCTTAAAGAGGAA
ACACAAAAATCCCTTAAAGAATAACAGGAAAACACAGTCTAATATGGCAA
AGAAAATGAACAAAAACATTCAAGATCTATAAATATATATAGAACCACTA
TAGATATCACAAAGGGAGACAACCCTGGAGTTAGGAAATCTAGGAAAAAG
ATCAGGAGTCATAGATGCAAGCATCACCAACTGAATACCAGAGATAGAAG
ATAGAATCTCAGGAGCAGAAGATACCATAGAAAACATTGGCACAACAATC
AAATAAAATGCAATATGCATAAAGATCCTAACCCATAACATCCAGGTAAT
CCCAGGACAACATGAGAAGAACCAACCTAACGAAAATAGGTCATAGATTA
GACTGAATTTTCCATCTTAAAAGGTTCTGTTTTTATCGTCCACACCATTA
CACTAATATTACTTTCCCTTCCTAAAGAACAGC
TTTTTTTTTTTNNCNNTTTTTTCCNTTTTTTCCCCNCTTTCCCTATTCCC
CNNTCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTCCTAGTATTCCTTAG
GAAACAGCTCTAAGCCTTAAAGAGTCTTGTGACTTACTTCATGAACTGGC
ATTTGACTTTCAGGTAGTTAATATATCTTAAAATAGTTTTCCTGGTGAGA
TATCAAGTTATTGCCTGATTAAGTTCTGGCAGGAAATAATGTAATTCATA
TTAGAGAAGAGATCCTGTCAAATTTTTGATGCTTTGCAGAAGTTGCATAT
GCATATTTATACATGTGTGTGTGTGTAATGTGTACTCACTATGATAAATA
TCACTTAGAGTCTCTATATTTCAAGCCCAGCACGATAGAGTGCATGTAGA
CTGAATCTACATCCTCAACTTACCATGAGTTATATTCTCAGTTATTTTCT
TTATTTTCAATTCATTGTATTGTATGTCTTCTTGGGCTACCTTATGACAT
TTCATTGCATATCCTCAGTGCACATGTTTAGTTTTGCATATATGCCATTA
TCAAAATATCTCAACTAGATACATCTGATCTGTTACATATTTGGTTACCT
GGATCACCATTTTTTGCATATACTTTTACACATATCAATCCCTCACTTAT
TGGTTTTTTGACTCCGTTTAATTACTCCCCCACTAGTTGTCATTATATTT
TCCGCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_h12.g1 MSMg01no069_h12.g1 CHROMAT_FILE:
MSMg01no069_h12.g1 PHD_FILE: MSMg01no069_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:14 2005
         (209 letters)



>mm_chr18_7972200_7972808
          Length = 609

 Score =  369 bits (191), Expect = e-107
 Identities = 203/207 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgtcctagtattccttaggaaacagctctaagccttaaagagtcttgtgacttactt 60
           ||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 201 ttttgacctagtattccttaggaaacagctctaaaccttaaagagtattgtgacttactt 260

                                                                       
Query: 61  catgaactggcatttgactttcaggtagttaatatatcttaaaatagttttcctggtgag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgaacaggcatttgactttcaggtagttaatatatcttaaaatagttttcctggtgag 320

                                                                       
Query: 121 atatcaagttattgcctgattaagttctggcaggaaataatgtaattcatattagagaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatcaagttattgcctgattaagttctggcaggaaataatgtaattcatattagagaag 380

                                      
Query: 181 agatcctgtcaaatttttgatgctttg 207
           |||||||||||||||||||||||||||
Sbjct: 381 agatcctgtcaaatttttgatgctttg 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space:   120000
Effective search space used:   120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)