BAC Information

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BAC

Clone NameMSMg01-069O06
Chromosome18 (Build37)
Map Location 59,098,934 - 59,099,167
singlet/doubletsinglet
Overlap geneAdamts19
Upstream geneSlc12a2, Fbn2, Slc27a6, Isoc1
Downstream geneA730017C20Rik, 4833446K15Rik, LOC667549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069O06.T7 (MSMg01no069_o06.b1)MSMg01-069O06.TJ (MSMg01no069_o06.g1)
ACCAG294042AG294043
length692698
length of high quality
(start - end)
234 (128 - 361)---
definitionCHROMAT_FILE: MSMg01no069_o06.b1 PHD_FILE: MSMg01no069_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:46 2005CHROMAT_FILE: MSMg01no069_o06.g1 PHD_FILE: MSMg01no069_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGATATGTCCCGCATAAAAAACAGTCTTCTACATTCCCATCT
AAGTGAAGCAAGATACAAACAAGCCTCCAGAAGAATCTTTCCTCTAAAAA
CAAATTAAAACTATGCTGACGCAAGAATACCCTGCAAAGACCATGGGAGA
CTCTCGAAATGTTGCAGGATGCATTTACGAAACAGACTGTATGAAATCAG
CTCATATCTGACCAGCTAGATAAACACAAACAGAACTAAGGGTCCTTTGC
TCCTGGACTTGTGCTTTTATGACCATATGAACCATATGATTTCAAAGTTC
TGACTCTTCTGGTTTAGGTTCCCGCACAACTTAGGTAAGTTATTTACCTC
ATAGTTGTAGTGTATATGCCATTTACCTATAAAGCGATAACTTCTTAAAG
TCTATGGTAGACTAAATCTTATGCCATGAGCATGATAGTACATATATTTT
GTTCCTATTTTTACAACCGCTAGCCTTACCATTACCTATTTTACACTGTT
CTTTCCACCATTTCTTCTCTGTTTGCCACACATCTCCATAAATCCTAAAC
CTATTCTTTCCCATTATGTTATAATAGCGAATACCAGCCTCTGTTCTACA
ATAAATTAAGTTTTTGCTTTTTTCACTCATTTGACGTTTACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTAAACTTTCATCAGTGACCCTTTACATCACAAAACGTAT
AATGCTTCGCATAACAGAAAGTACAATAATTACTGCTGATTCGGAACAAT
ACTGGATTGATCTATATTCGATGATAGCGTAGAGCAAGTTCCTCTGCTCA
TGTATAGATCTGTGTGCTTAGACTTGACACAATTCCTTCATGGTTCTAAA
TCTTCTTCAGAATATTTACATCTACTTATCTAATACTTATTTTCTTAAAC
TTCACTAACTGATTCATACACTGCATATTATCTACTGTATTTTATTTTAT
TTTTTTTTTTTCCCCCCCCCCCCCATATGCATGAGATTCACATTCAATGT
GCCTGTCCTGCCCAAAACAAAAAAAAAAGACTGTGTGGGGGGGGGCCGGA
CCTTTCCCCTTTCCCTTTCCCTTTCACCCTTACTGCTTTTCACTCACCTT
CTCATCTTCCTTTCTCTTTACTCCTATTTCCTCAATGTTTACCTCTCTTT
TTCCCTCTTCCTTTTTTTTTTCCTAACTCCTTAACCCTTCTCCCTTCTTC
TTCCCTCCCTATTCTTATTATTTCCTATTCCCATTTTTTTTTCCCCCTTT
CCCTTATTTTTTATTTTCTTACATTCCTCCTTATTTCTTTTCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_o06.b1 MSMg01no069_o06.b1 CHROMAT_FILE:
MSMg01no069_o06.b1 PHD_FILE: MSMg01no069_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:46 2005
         (234 letters)



>mm_chr18_59098734_59099367
          Length = 634

 Score =  406 bits (210), Expect = e-118
 Identities = 228/234 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaagaatctttcctctaaaaacaaattaaaactatgctgacgcaagaataccctgcaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 434 cagaagaatctttcctctaaaaacaaattaaaactttgctgacgcaagaataccctgcaa 375

                                                                       
Query: 61  agaccatgggagactctcgaaatgttgcaggatgcatttacgaaacagactgtatgaaat 120
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agaccaggggagactctcaaaatgttgcaggatgcatttacgaaacagactgtatgaaat 315

                                                                       
Query: 121 cagctcatatctgaccagctagataaacacaaacagaactaagggtcctttgctcctgga 180
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 314 cagctcataactgaccagctagataaacacaaacagaactaaggttcctttgctcctgga 255

                                                                 
Query: 181 cttgtgcttttatgaccatatgaaccatatgatttcaaagttctgactcttctg 234
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttctgcttttatgaccatatgaaccatatgatttcaaagttctgactcttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)