BAC Information

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BAC

Clone NameMSMg01-070B08
Chromosome18 (Build37)
Map Location 3,910,110 - 3,910,614
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549
Downstream geneEG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070B08.T7 (MSMg01no070_b08.b1)MSMg01-070B08.TJ (MSMg01no070_b08.g1)
ACCAG294189AG294190
length682683
length of high quality
(start - end)
569 (41 - 609)507 (72 - 578)
definitionCHROMAT_FILE: MSMg01no070_b08.b1 PHD_FILE: MSMg01no070_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:01 2005CHROMAT_FILE: MSMg01no070_b08.g1 PHD_FILE: MSMg01no070_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTATACGACTACTATTTCCAAGGATCCGCGGAATTC
ACACTGAGACTCCCAATGGCTGTATCGTGGGATGCTGGAACATGGTTCTT
TCTGGGTTACCTATGCTTAGCAAACATTGGTACCTCTGCTTGCCATGAAC
CACTTGGCACTGGTACCAGTTTTTGCCTCTCTGCACTAAGGACAGGAAGT
GCTATGTGGTGGCTTCATGGACTCTCTACTTGTCTCTCCTGAGGCCAGGT
GCTGAGTCATACTTCAGACAGAAGGACATGGTGGCCTCTCCCTTCGCTCC
AGGCTCCTCCATGCTCTAAGATCTTTTGGTCAACACAGTCTCCCAGAAAA
AATTAAATAAACAAAACAACACCATGGTGCAGTGGCCCCATTTGTTGGCA
TCAGGACCTCCCAAACCTATGACATCACATAGGGTGACATCAAGACCTAC
AGACCTGTTACCAAGACAACAGCTACCATATTCCAAGAATCCACTTGGCT
CACCTCCCACTTTTACCTGAGTTATGTCATTTTCCATATAAATAAGGGGA
ATGCCCCTCCCTCTCTCTTTTTCTCCTTTCTCCTTCTGCTGCCACCTTCC
CTCTTCTCTTTCTCTCCCAATAAACCTCTTACACGTGCAACTGTTTGGTC
CAGTGTACTGTGCTCAGATGTGAGCCACCATT
AATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGTGCCCACCACGGCAAGAGAACAGTAC
TTAATAGTTTTGCATTTTCTATTAGAAGGAAACTTGCTTGGAGAAAAACT
GATTTCCCATTTGTTTCAGAAATGTCATTTCCAGAATTATCAGATACAAA
TCATTTCAGAGCATGCTGTTTCAAAATTTACATAAAAAACTATTGATGAG
TGAGGGCCATGATTTGAAGTTAGTAAATACTATTCCTTTTAAAAGAACAC
AGATAGGAGAGCAATATGATAGTATAGTGTACCTGAGGATAAAACACCAT
TTTCTCCCATATTTCCAGGACAAAAATGCTAGTTTTGAAGGTAACTGGGA
AATAAGATGGTGCCTTAAACTTCACAGGGAGATTTTTTTTTTTAATGTAG
AGTTTTTAAAATTTTTTTATTAGATATTTTCTTCATTTACATTTCAAATG
CTATCCCAAAAGTGCCCTATACCCTCCCCTGCCCTGCTCCCCTACCTTAA
CTTAAAGTTTTTAAGACTGCACTTTTATTTTGAGGTGGACCATTAACCTA
TTCTGTAACCAGGTCCTAGACAAACCAATTTTCCTCAGTGCCAGCTGTCT
TGCTTCCTGTGTCCAATGACCGAGGCCCCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_b08.g1 MSMg01no070_b08.g1 CHROMAT_FILE:
MSMg01no070_b08.g1 PHD_FILE: MSMg01no070_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:01 2005
         (507 letters)



>mm_chr18_3909910_3910814
          Length = 905

 Score =  907 bits (469), Expect = 0.0
 Identities = 497/507 (98%), Gaps = 2/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgcccaccacggcaagagaacagtacttaatagttttgcattttctattagaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgcccaccacggcaagagaacagtacttaatagttttgcattttctattagaaggaa 260

                                                                       
Query: 61  acttgcttggagaaaaactgatttcccatttgtttcagaaatgtcatttccagaattatc 120
           |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 acttgcttggaggaaaactggtttcccatttgtttcagaaatgtcctttccagaattatc 320

                                                                       
Query: 121 agatacaaatcatttcagagcatgctgtttcaaaatttacataaaaaactattgatgagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatacaaatcatttcagagcatgctgtttcaaaatttacataaaaaactattgatgagt 380

                                                                       
Query: 181 gagggccatgatttgaagttagtaaatactattccttttaaaagaacacagataggagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggccatgatttgaagttagtaaatactattccttttaaaagaacacagataggagag 440

                                                                       
Query: 241 caatatgatagtatagtgtacctgaggataaaacaccattttctcccatatttccaggac 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 441 caatatgatagtatagtgtacctgaggataaaacaccatttcctcccatatttccaggat 500

                                                                       
Query: 301 aaaaatgctagttttgaaggtaactgggaaataagatggtgccttaaacttcacagggag 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaatgctagttttgaaggtaactgggaaataagatggtgccttaaacttcacagggag 560

                                                                       
Query: 361 atttttttttttaatgtagagtttttaaaatttttttattagatattttcttcatttaca 420
           ||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 attttttttt--aatgtagagtttttaaaaattttttattagatattttcttcatttaca 618

                                                                       
Query: 421 tttcaaatgctatcccaaaagtgccctataccctcccctgccctgctcccctaccttaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tttcaaatgctatcccaaaagtgccctataccctcccctgccctgctcccctaccttaac 678

                                      
Query: 481 ttaaagtttttaagactgcacttttat 507
           ||| |||||||||||||||||||||||
Sbjct: 679 ttagagtttttaagactgcacttttat 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 905
Length adjustment: 10
Effective length of query: 497
Effective length of database: 895
Effective search space:   444815
Effective search space used:   444815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)