Query= MSMg01no072_b05.b1 MSMg01no072_b05.b1 CHROMAT_FILE:
MSMg01no072_b05.b1 PHD_FILE: MSMg01no072_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:41 2005
(530 letters)
>mm_chr18_10708217_10709146
Length = 930
Score = 874 bits (452), Expect = 0.0
Identities = 498/526 (94%), Gaps = 21/526 (3%)
Strand = Plus / Plus
Query: 5 gaattccagttttctgcacgagcagcaagtgctcttaaccattttcctaatgccatagtg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gaattccagttttctgcaagagcagcaagtgctcttaaccattttcctaatgccatagtg 285
Query: 65 aacatttgtcaaacagttaaaagttgtttttaagaataacttaaagccgggtgtggtggc 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aacatttgtcaaacagttaaaagttgtttttaagaataacttaaagccgggtgtggtggt 345
Query: 125 gcacgcctttaatcccagcacttgggaggcagaggcaggtgaatttctgagttcaaggcc 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcacacctttaatcccagcacttgggaggcagaggcaggtgaatttctgagttcaaggcc 405
Query: 185 agcctggtctacagagagaattccaggacagccagggcaacacagagaaaccctgtctcg 244
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 406 agcctggtctacagagtgaattccagtacagccagggcaacacagagaaaccctgtctcg 465
Query: 245 aaaaacaaaacaacaacaacaaaaaacaacaacttaaaacttacatatatctcacacaaa 304
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 466 aaaaacaaaacaacaacaa-aaaaaccaacaacttaaaacttacatatatctcacacaaa 524
Query: 305 aaggcatattactaacaggaatgctgaaaacattttattttattttattttattttattt 364
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 525 aaggcatattactaacaggaatgctgaaaacattttattttactttattttattttattt 584
Query: 365 tattttattttattttatttggcagtttcttgttaagtagccatggatggcctgaaactt 424
||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 --------------------ggcagtttcttgttaagtagccatggatggcctgaaactt 624
Query: 425 actatataggcttggctggcccaggtcttgcaacagtactgtgtcgacctcctgaatgct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 actatataggcttggctggcccaggtcttgcaacagtactgtgtcgacctcctgaatgct 684
Query: 485 gactcaaagtcaaaacattccaagatttaatggaaggcaaggttta 530
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gactcaaagtcaaaacattccaagatttaatggaaggcaaggttta 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no072_b05.g1 MSMg01no072_b05.g1 CHROMAT_FILE:
MSMg01no072_b05.g1 PHD_FILE: MSMg01no072_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:41 2005
(456 letters)
>mm_chr18_10886372_10887227
Length = 856
Score = 851 bits (440), Expect = 0.0
Identities = 452/456 (99%)
Strand = Plus / Minus
Query: 1 tgtgtggtgcttgagattgaacccaaagtttcaagcatgctaggcaagcactctaccaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 tgtgtggtgcttgagattgaacccaaagtttcaagcatgctaggcaagcactctaccaac 784
Query: 61 aaagctatgcccagctacctcccatgccaccttttaaaagtcagtcctggccgagcggtg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 783 aaagctatgcccagctacctcccatgccaccttttaaaagtcagtcctggccaagcggtg 724
Query: 121 gtggcacatgcctttaatcccagcacttaggaggcagaggcaggtgatttctgagtttga 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 723 gtggcacatgcctttaatcccagcacttgggaggcagaggcaggtgatttctgagtttga 664
Query: 181 ggccagcctggtctacagaatgagttccaggacagccagggctacacagagaaaccctgt 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgt 604
Query: 241 ctcgaaaaaagaaaaagaaaaagtcagtcctgatgcttagtcctagctctggagaccctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctcgaaaaaagaaaaagaaaaagtcagtcctgatgcttagtcctagctctggagaccctg 544
Query: 301 aggtgcaatcagcttacctgaatatattcaacattgagattttgttaaatctcttctggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aggtgcaatcagcttacctgaatatattcaacattgagattttgttaaatctcttctggt 484
Query: 361 agctcctaaagagaaatcaagttgataactggggtggtaactcagtccgtaaggtgcttg 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agctcctaaagagaagtcaagttgataactggggtggtaactcagtccgtaaggtgcttg 424
Query: 421 cctagcatgaggacttctgttcaatttccagaaacc 456
||||||||||||||||||||||||||||||||||||
Sbjct: 423 cctagcatgaggacttctgttcaatttccagaaacc 388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
