Query= MSMg01no073_j17.b1 MSMg01no073_j17.b1 CHROMAT_FILE:
MSMg01no073_j17.b1 PHD_FILE: MSMg01no073_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:43 2005
(399 letters)
>mm_chr18_82693951_82694745
Length = 795
Score = 578 bits (299), Expect = e-169
Identities = 340/357 (95%), Gaps = 7/357 (1%)
Strand = Plus / Minus
Query: 43 aggctggagggatggctcaggattacagttaatacgaagcccggcaacctgagttcaatt 102
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 795 aggctggagggatggctcaggattacagttaatacgaagcccagcaacctgaattcaatt 736
Query: 103 cctgggacccacatgttgggaaagagattcagcttccaaaaattgccctcctctgaccta 162
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cctgggacccacacgttgggaaagagattcagcttccaaaaattgccctcctctgaccta 676
Query: 163 cacctctgcatacatacatacacacaccaccaccaccaccaccaccaccaccaccaccac 222
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cacctctgcatatatacacacacacaccaccaccaccaccaccaccaccaccaccaccac 616
Query: 223 caccaccaccaccaccaccaccaatgacaacaataaaacagcaacaaaaccaaaaaagcc 282
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 615 taccaccaccaccaccacca---atgacaacaataaaacagcaacaaaaccaaaaaagcc 559
Query: 283 ccaaccaaactaaaccaaccaaccaaccaaaacagaaaagtcagccagggtcactggagt 342
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 558 ccaaccaaactaaaccaaccaaccaa----aacagaaaagtcagccaggatcactggagt 503
Query: 343 tctctttcttcatgtgtcacttttcgtctttagcctggaacccgtgtacatcccaga 399
||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 502 tctctttcttcgtgtgtcacttttcgtctttagcctggaacccatgtaaatcccaga 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 795
Length adjustment: 9
Effective length of query: 390
Effective length of database: 786
Effective search space: 306540
Effective search space used: 306540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_j17.g1 MSMg01no073_j17.g1 CHROMAT_FILE:
MSMg01no073_j17.g1 PHD_FILE: MSMg01no073_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:43 2005
(395 letters)
>mm_chr18_82540635_82541431
Length = 797
Score = 712 bits (368), Expect = 0.0
Identities = 387/394 (98%), Gaps = 2/394 (0%)
Strand = Plus / Plus
Query: 1 aggttcagttcttggcgcagtctttccatggctttgactgagacttttgtcctctacctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 aggttcagttcttggcgcagtctttccatggctttgactgagacttttgtcctcgacctc 260
Query: 61 tcactgagcagagatgtccagcgac--ctcccagcccccgatgctgtggtctttcctcac 118
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tcactgagcagagatgtccagcgacacctcccagcccccgatgctgtggtctttcctcac 320
Query: 119 tgaggcacctgaggaactcaggcctcctgttcatcctacacagggcaacactggccatca 178
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 321 tgaggcacctgaggaactcaggcctcctgttcaccctgcacagggcaacactggccatca 380
Query: 179 gtattccagatacctcgtcccatcacaaaggagagaaatttcttggaaccagtaagtatg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattccagatacctcgtcccatcacaaaggagagaaatttcttggaaccagtaagtatg 440
Query: 239 gagagagaacggtaggctagagtgcttgcacatatattttgtagctcacgctgctagctg 298
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagagaacggcagggtagagtgcttgcacatatattttgtagctcacgctgctagctg 500
Query: 299 caggactaaggaactctattttcaacactcatttacacataaccttgatggcacagcttg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggactaaggaactctattttcaacactcatttacacataaccttgatggcacagcttg 560
Query: 359 ctttgcctggtatatttttcatctactctctaca 392
||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgcctggtatatttttcatctactctctaca 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 797
Length adjustment: 9
Effective length of query: 386
Effective length of database: 788
Effective search space: 304168
Effective search space used: 304168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
