Query= MSMg01no075_l01.b1 MSMg01no075_l01.b1 CHROMAT_FILE:
MSMg01no075_l01.b1 PHD_FILE: MSMg01no075_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:25 2005
(376 letters)
>mm_chr18_84412079_84412854
Length = 776
Score = 648 bits (335), Expect = 0.0
Identities = 367/389 (94%), Gaps = 20/389 (5%)
Strand = Plus / Minus
Query: 5 gaattcttttggtg----cccttaacttattttcagagaaatcttgtatcacctatgtct 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gaattcttttggtgttaa---ttaacttattttcagagaaatcttgtatcacctatgtct 703
Query: 61 tttgattaattcatcatttgttgttatcctttaacataccatgtagaacttttacctaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tttgattaattcatcatttgttgttatcctttaacataccatgtagaacttttacctaaa 643
Query: 121 gtatacccaagagaagatagatgtgctgcc-------------ttttttttttttttttt 167
|||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 642 gtatacccaagagaagatagatgtgctgcctttttttttttttttttttttttttttttt 583
Query: 168 ttttttgtcaagctagtgaaacaatgcagtgtgaaattccaagctcttttctcctgagga 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ttttttgtcaagctagtgaaacaatgcagtgtgaaattccaagctcttttctcctgagga 523
Query: 228 gcacacacttcgtaaaacctgttagcacgctcactttcaaatgtgctcacagattgttat 287
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gcacacacttcgtagaacctgttagcacgctcactttcaaatgtgctcacagattgttat 463
Query: 288 cctgcttgttactaaacagtccaactagtgactctgaaaatttacagtaatgcatttgaa 347
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 462 cctgcttgttactaaacagtccaactagtgactctgaaaatttagagtaatgcatttgaa 403
Query: 348 gatctgtgtaatggtgtgtatttttaaag 376
|||||||||||||||||||||||||||||
Sbjct: 402 gatctgtgtaatggtgtgtatttttaaag 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no075_l01.g1 MSMg01no075_l01.g1 CHROMAT_FILE:
MSMg01no075_l01.g1 PHD_FILE: MSMg01no075_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:25 2005
(504 letters)
>mm_chr18_84258637_84259540
Length = 904
Score = 936 bits (484), Expect = 0.0
Identities = 499/504 (99%)
Strand = Plus / Plus
Query: 1 tgattgtgaaacttttggaaacctgttggaaccttagtgtttcgcgtgagcagtgggtgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tgattgtgaaacttttggaaacctgttggaaccttagtgttttgcgtgagcagtgggtgg 260
Query: 61 gagtgagtggagtgcgtgggtggagactttctgaaagggtggcgcgtgtatgtccttagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtgagtggagtgcgtgggtggagactttctgaaagggtggcgcgtgtatgtccttagc 320
Query: 121 atgctttggctgcgcatgaagcagaggattgcttcatcctgtgatgaaatgctgagactg 180
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgctttggccgtgcatgaagcagaggattgcttcatcctgtgatgaaatgctgagactg 380
Query: 181 tggagaataaaaatttgaaccctgccgacctaaaaagggcttgagctgtgttcacataga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tggagaataaaaatttgaaccctgccgacctaaaaagggcttgagctgtgttcacataaa 440
Query: 241 gcgtccagagtacaccaatgatttgttagaagtggagatgagaatagactgaaaagcttt 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gcgtccagagtacaccaatgatttgttagaagtggaaatgagaatagactgaaaagcttt 500
Query: 301 ccgagcaaacttcattagagattaaaaaagaaaagaaaagaaaggaaaagaaaagaaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccgagcaaacttcattagagattaaaaaagaaaagaaaagaaaggaaaagaaaagaaaaa 560
Query: 361 aggaaagaaaagagcttcatgccgggctttcactttcttctattgttgtgatttatatag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggaaagaaaagagcttcatgccgggctttcactttcttctattgttgtgatttatatag 620
Query: 421 tgttgactgtaaacactaataaacgcacacaaactgcttacataaaatccctcgttgaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttgactgtaaacactaataaacgcacacaaactgcttacataaaatccctcgttgaaa 680
Query: 481 caggtgtgaaatgtggagggggtg 504
||||||||||||||||||||||||
Sbjct: 681 caggtgtgaaatgtggagggggtg 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
