BAC Information

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BAC

Clone NameMSMg01-075P13
Chromosome18 (Build37)
Map Location 87,566,600 - 87,566,953
singlet/doubletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961, LOC100039972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075P13.T7 (MSMg01no075_p13.b1)MSMg01-075P13.TJ (MSMg01no075_p13.g1)
ACCAG298660AG298661
length699723
length of high quality
(start - end)		361 (42 - 402)271 (76 - 346)
definitionCHROMAT_FILE: MSMg01no075_p13.b1 PHD_FILE: MSMg01no075_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:47 2005CHROMAT_FILE: MSMg01no075_p13.g1 PHD_FILE: MSMg01no075_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCATTCTCACTGTCAAAAGCTCACACCTAGCTCCTGAAAGTGACTAGGT
AGGCACCTAATTTATAAGGGGAAAAATGAAAGTGCAATCACCAGATGCAT
CTCCCAGGTTGAAAAATCTGAGCATCTAAGTGAAAAAGAAACTTCAGGAT
AGGAATAATATCAATTGCCAACTCTTATGGACATCAATAGAAGATAACTG
TCATGCTCTAAAATAACCCAACTTGTAACTTGTTTGTTACAGCAGTTAGC
AGTGCACTATCTACTTGATAAATCTTTTTCCTTAAATATGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGGAAG
GAAGGTGTTTTTCCCCCCCCCCGTGTGGCTTTTCTCGCCGCCTCCTTGCT
TTGCTCGTCTGTTTCCTCCTCTTCTTTTCTCCTCTCCTTTTTTTTCCTCT
AATCTCCCCCCACGAATTTCCCGCTACACCCCTCGCGTGCACCCCTCATT
AATTTTACCATCTATCTCCCTACCTAGTCCTAATTGATACTTGTAATGAA
CTCATTATTATTACTTCTACTTCCTTTTCTTATTTTATCTTATCCTTATA
TATCTCTGCGTATTGTATCCTTAACCTCTTCTCTTAGTTTGCCTCTTGG

NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTGCACAGAAA
AACCCTGTCTCAAAAACAAAAAACAAAAAACAAAACAAAACAAAACAAAA
CTTAAAAACAAACAAACAAAACAAAAACAAAAACAAACAAACAAAAAACG
GAAAGCACTCACCAAGGACAGCCTTTGGTGGTCTTTGGCACTCAGCTTGG
AAACAGTGATACCAAAACTATTAAGGGGAATGCCAGGGCCAGAAAGTGGG
AATGGATGGGTTGGTGAGCAGGGGAATGGGAGAGGGGATAGGGGTNTNNN
NNTNNNNNTNNTTTTTTCTCTCTTTTTATTTTTTTTTTTTTTTNTTTTTT
TTTTTTTATTTTTTTTTTTCCCCCCCCGCGCGGGTTNTCTTTTCTTGTTT
TTGTTCTTTTTTTTTTTTTTTTTCCTTTCTTTTTTTCTCCTTCTTCTCGG
CCTGTCTCTCCGTCGTCGCCTCCTCTTCTCCTCCCCTCTCCCGTATGTCG
TTTTTTTTCTCCATCTCCTCTATTTTTCTTCCCCGTTAGTTTTTATGTTG
CTCAAAAACACGCTTAACAACTATTTGTTTTACTTTCTCCAATAATTATC
TACTCTAACATTCAATATGACCAAAAATTTCATATTTATGTCCTCGAAAC
TTCTCATATTTTCTATACAATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_p13.b1 MSMg01no075_p13.b1 CHROMAT_FILE:
MSMg01no075_p13.b1 PHD_FILE: MSMg01no075_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:47 2005
         (361 letters)



>mm_chr18_87566397_87567157
          Length = 761

 Score =  625 bits (323), Expect = 0.0
 Identities = 350/359 (97%), Gaps = 6/359 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcattctcactgtcaaaagctcacacctagctcctgaaagtgactaggtaggc 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcattcacagtgtcaaaagctcacacctagctcctgaaagtgactaggtaggc 263

                                                                       
Query: 64  acctaatttataaggggaaaaatgaaagtgcaatcaccagatgcatctcccaggttgaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acctaatttataaggggaaaaatgaaagtgcaatcaccagatgcatctcccaggttgaaa 323

                                                                       
Query: 124 aatctgagcatctaagtgaaaaagaaacttcaggataggaataatatcaattgccaactc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatctgagcatctaagtgaaaaagaaacttcaggataggaataatatcaattgccaactc 383

                                                                       
Query: 184 ttatggacatcaatagaagataactgtcatgctctaaaataacccaacttgtaacttgtt 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatggacaccaatagaagataactgtcatgctctaaaataacccaacttgtaacttgtt 443

                                                                       
Query: 244 tgttacagcagttagcagtgcactatctacttgataaatctttttccttaaatatgagag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgttacagcagttagcagtgcactatctacttgataaatctttttccttaaatatgagag 503

                                                                      
Query: 304 agagagagagagagagagagagagagagagagagagagagagagaga-ggaaggaagga 361
           |||||||||||||||||||||||||||||||| || || || || || |||||||||||
Sbjct: 504 agagagagagagagagagagagagagagagag-ga-ag-ga-ag-gaaggaaggaagga 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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