Query= MSMg01no076_i22.b1 MSMg01no076_i22.b1 CHROMAT_FILE:
MSMg01no076_i22.b1 PHD_FILE: MSMg01no076_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:34 2005
(678 letters)
>mm_chr18_71816742_71817821
Length = 1080
Score = 1270 bits (657), Expect = 0.0
Identities = 669/673 (99%), Gaps = 2/673 (0%)
Strand = Plus / Plus
Query: 8 attccattaacatttctctgaagaaattac-agcttatcttcagctgatgctctggattt 66
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 208 attccattaacatttctctgaagaaattacaagcttatcttcagctgatgctctggattt 267
Query: 67 tactgcagatttagatagtccacggggacactgggtcttttgagattcttgtgatgtgta 126
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tactgcagatttaggtagtccacggggacactgggtcttttgagattcttgtgatgtgta 327
Query: 127 ctccaaaatagaatacaagaacatgaatatatctttgataaattgcggtaaacatgaaga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctccaaaatagaatacaagaacatgaatatatctttgataaattgcggtaaacatgaaga 387
Query: 187 atactgaagcatggaaattcgtgaccttctaagtataattctttta-ttttttttattcc 245
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 388 atactgaagcatggaaattcgtgaccttctaagtataattcttttatttttttttattcc 447
Query: 246 tttgtggaagaaaagaatgtaaaaccagggggtagatatgttgtcacaagtttcttccta 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttgtggaagaaaagaatgtaaaaccagggggtagatatgttgtcacaagtttcttccta 507
Query: 306 ccagatgggagatggtggcatgtcacttctgtttctctgaattcaaaatctaaagcaatc 365
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ccagatgggagatgatggcatgtcacttctgtttctctgaattcaaaatctaaagcaatc 567
Query: 366 caagttttattacaaaactaatctgcttttatcctaaccttaaatggagtccaagagttt 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 caagttttattacaaaactaatctgcttttatcctaaccttaaatggagtccaagagttt 627
Query: 426 aaatactctgatcttaggctaacacacctagaggaagttgtaaatattcctaaaaaggac 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aaatactctgatcttaggctaacacacctagaggaagttgtaaatattcctaaaaaggac 687
Query: 486 aataggttaacagagaaactaggatttatatgattggtttaatttctaaactcttatgtt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aataggttaacagagaaactaggatttatatgattggtttaatttctaaactcttatgtt 747
Query: 546 aagtattcttcacatataattctgtgaataatatctttaaaaaaataaaagctccttaat 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aagtattcttcacatataattctgtgaataatatctttaaaaaaataaaagctccttaat 807
Query: 606 cccactaccaacaaattcttccgttacttattccctcagacgtgcccagttattgttgcc 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 cccactaccaacaaattcttccgttacttattccctcagacgtgcccagttattgttgcc 867
Query: 666 aaggaaacagcca 678
|||||||||||||
Sbjct: 868 aaggaaacagcca 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1080
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1070
Effective search space: 714760
Effective search space used: 714760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_i22.g1 MSMg01no076_i22.g1 CHROMAT_FILE:
MSMg01no076_i22.g1 PHD_FILE: MSMg01no076_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:34 2005
(579 letters)
>mm_chr18_71973125_71974104
Length = 980
Score = 969 bits (501), Expect = 0.0
Identities = 531/547 (97%), Gaps = 14/547 (2%)
Strand = Plus / Minus
Query: 1 tttggagtcctcagtaatagccagcagacttggatcctctgttgacattatcatgtaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttggagtcctcagtaatagccagcagacttggatcctctgttgacattatcatgtaatt 482
Query: 61 ctctttttaatgatttcagaatagtcccctccaagtcagatagcagaagaagcttaagta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctctttttaatgatttcagaatagtcccctccaagtcagatagcagaagaagcttaagta 422
Query: 121 ggccaaaatttccatttaaaaggaagtgaaaagggagggaacctcaagaggaatagtcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggccaaaatttccatttaaaaggaagtgaaaagggagggaacctcaagaggaatagtcaa 362
Query: 181 aggtactgagttgctatgtgtagtgctgtgctccaaggcatc-tgaatagtccagggaag 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 361 aggtactgagttgctatgtgtagtgctgtgctccaaggcatcttgaatagtccagggaag 302
Query: 240 aactgtgtctgaccccgtaatcactatcttctttatccctgtttatatactgctctcttt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aactgtgtctgaccccgtaatcactatcttctttatccctgtttatatactgctctcttt 242
Query: 300 gtttctaaggttgccagctctggggactggcagattagcttcaaaccaaaaccaaaccaa 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 gtttctaaggttgccagctctggggactggtagattagcttcaaaccaaaaccaaaccaa 182
Query: 360 accaaaccaaaccaaaccaaaccaaacc-------aaaccaaaccaaaccaaaaaaaaaa 412
|||||||||||||||||||||||||||| ||| ||| ||| ||||||||||
Sbjct: 181 accaaaccaaaccaaaccaaaccaaaccaaaaaaaaaa--aaa--aaa--aaaaaaaaaa 128
Query: 413 aaaaaagccaacatttttttttcaacagcaaaatctaaactgggttttagttgaagtaca 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aaaaaagccaacatttttttttcaacagcaaaatctaaactgggttttagttgaagtaca 68
Query: 473 tttttattgttgcaatcaaattagaatcacgaataatggaattttgaatatattcatgag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 67 tttttattgttgcaatcaaattagaatcacgaataatggaattttgaatatatccatgag 8
Query: 533 ttttaca 539
|||||||
Sbjct: 7 ttttaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
