BAC Information

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BAC

Clone NameMSMg01-078C12
Chromosome18 (Build37)
Map Location 76,975,950 - 76,976,220
singlet/doubletsinglet
Overlap genenone
Upstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188, EG639576
Downstream geneEG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C12.T7 (MSMg01no078_c12.b1)MSMg01-078C12.TJ (MSMg01no078_c12.g1)
ACCAG299559AG299560
length745731
length of high quality
(start - end)
272 (43 - 314)306 (71 - 376)
definitionCHROMAT_FILE: MSMg01no078_c12.b1 PHD_FILE: MSMg01no078_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:23 2005CHROMAT_FILE: MSMg01no078_c12.g1 PHD_FILE: MSMg01no078_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXCTATCCCAAGAGGACCGCGGAAT
TCCCTTATGCCCTCCTCTTTGACCTCCTTGGTGGCCAGTGTGTCACATGG
GCATCCATGCTGTCTGGAAGGTAGGGAAGACACATACTCAGCCAGGGGAA
TGAAGACACCTTAGGAAGGCTAGAGTGGGTGTGGTCAGGTCTTCTGCTAC
CTGGTCAAGACATCCCTTCTACTGGAAAGAAGTTGTTGGATGGGTTTCCC
TCAGTTTTTGTCATCTAACTTCTTCCTCTCACCCCATCTGATTCCTCTGA
TCACCAGCTATCGGTTGTTATTAGGCATGGCTCGTCCTTGCGAAGACCCT
GGGAGGAGCATAAGCCCCACCCTCACCCAGAACTGAGCTCTGGAAGCCAG
TTGAAGTGTCCTGAGGTTGAGGTCTGGACACACACATGTTGGGAGTGAGT
TGCAGACTCTTCTGTATATTTTAGGGTCTGTCCCTAGACCGAGCTTCTAC
TCCTTTCAACCTTCTTTTTATATCTGCTCGCCTCCCTTTTATTATCAATG
CTTTTTATACTCCCCCTGTTTATTAATTCTATTTTTTTTGTTTTCCCCCC
CACCCGCCTCAATCCCCACGCCATTCTCTCCTCTTTCCCTTTTATTTTTT
TTCCTCTCTTTAATTTTCCCATATGTCACCCCTCTTCTTTCAATCATTAT
CTCTCATTCTCCATTCTTTTCTCTCCCACCTCCTTCCCACCACAC
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCATTCTAGTATCATCTTGGGGTGTTCATT
GCTCACGCTTAGAAAAACGTTTGATAACTGTCTACTGATGTTTGTCTCCT
ACAACTTTGCTTAACTTATTTCTTAGTTTTCATAGTCTTTTTTTTTTTTT
AGATTCTTCAGGATTACATATATGGAAGATCATGTCCTGTACAGTTCTAA
TAATTTCTCCAACTTGACGGTTTTTATTTTCTTTTCCTCACTCAGTTATC
CTGGCTAGAGCATCACTCTGTTGAACAGGATGGGAAAGAGTGGGTGCTTC
AATCTAGTCCTGATCTTATTGAAGGCTTTCATCCTCGCACCAGTAAGCTT
GTCTAAACTACGTGCAAGTTTCTAGCAGGCGCCCTTTCTGGGGTTAAGAC
ACGCGTTTCTAGTTCTGTTGTTGCACCCTGCCCCGCCCAGCACGTTGAGT
TTTTCCATTAATCATAAGGTCTTGAACTTCCTGCGCCTGACTATATTTGT
CCCTATATATCCCTCTATTTTTCACCTTTTTTCCCCGACTCTTTCGTTTT
TATGCTCAATTTACTTCTATCCGTCACCCCTTCTGTTTTTCTCTTTTCCC
TGTGTTTTTTTCTCCCCTTCCACTGATTATTTAATTTTCCGCTCCTCTCC
TCTTCGCTTCTCCCCTTCACTTCGTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c12.b1 MSMg01no078_c12.b1 CHROMAT_FILE:
MSMg01no078_c12.b1 PHD_FILE: MSMg01no078_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:23 2005
         (272 letters)



>mm_chr18_76975748_76976420
          Length = 673

 Score =  485 bits (251), Expect = e-142
 Identities = 266/271 (98%), Gaps = 1/271 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattcccttat-gccctcctctttgacctccttggtggccagtgtgtcacatgggca 61
           |||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 473 cggaattcccttatagacttcctctttgacctccttggtggccagtgtgtcacatggtca 414

                                                                       
Query: 62  tccatgctgtctggaaggtagggaagacacatactcagccaggggaatgaagacacctta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tccatgctgtctggaaggtagggaagacacatactcagccaggggaatgaagacacctta 354

                                                                       
Query: 122 ggaaggctagagtgggtgtggtcaggtcttctgctacctggtcaagacatcccttctact 181
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 353 ggaaggctagagtgggtgtggtcaggtcttctgctacctgggcaagacatcccttctact 294

                                                                       
Query: 182 ggaaagaagttgttggatgggtttccctcagtttttgtcatctaacttcttcctctcacc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ggaaagaagttgttggatgggtttccctcagtttttgtcatctaacttcttcctctcacc 234

                                          
Query: 242 ccatctgattcctctgatcaccagctatcgg 272
           |||||||||||||||||||||||||||||||
Sbjct: 233 ccatctgattcctctgatcaccagctatcgg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space:   174632
Effective search space used:   174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)