Query= MSMg01no079_o20.b1 MSMg01no079_o20.b1 CHROMAT_FILE:
MSMg01no079_o20.b1 PHD_FILE: MSMg01no079_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:41 2005
(604 letters)
>mm_chr18_13214577_13215580
Length = 1004
Score = 1106 bits (572), Expect = 0.0
Identities = 593/600 (98%)
Strand = Plus / Plus
Query: 5 gaattctttcttttactgaagcagcctccaggttactccaggctgctttaagtggcagga 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcttttagtgaagcagcctccaggttactccaggctgctttaagtggcagga 264
Query: 65 ttccctccctaaagccgagcaatgtcctatcagctgagggtatggaccacactttaagac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccctccctaaagccgagcaatgtcctatcagctgagggtatggaccacactttaagac 324
Query: 125 cttgtatagactcctgagtttgtttccacatcctggcgattataaatgctgctactgaga 184
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 325 cttgtatagactcctgagtttgtttccacatcctggctattataaatgctgctgctgaga 384
Query: 185 atctgtaggcacacatatatctgtggaccatgttgcacttagaaaccatttcacagaatt 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 atctgtaggcacacatatatctgtgggccatgttgcacttagaaaccatttcacagaatt 444
Query: 245 ttctgctgcctaagaaacaaacttcaattttacttttttcttggttagcatgcaaacaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctgctgcctaagaaacaaacttcaattttacttttttcttggttagcatgcaaacaaa 504
Query: 305 tgaatttcactgtgacatttttgtgcttatataccacactttacattttgtcttatttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgaatttcactgtgacatttttgtgcttatataccacactttacattttgtcttatttta 564
Query: 365 tttttatttaaaagtttaaaattacctttgttcactttttaatctattttgtgcggtgta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttttatttaaaagtttaaaattacctttgttcactttttaatctattttgtgcggtgta 624
Query: 425 gggaggcatgtgccatgccatgacatccacgagtttcctccttctgctgtctgggtcacc 484
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 625 gggaggcatgtgccatgccatgacatccacaagtttcctccttctgctgtctgggtcacc 684
Query: 485 aggctcagaggcaggcactttcccctcagagcctcctggctggctcctggttccatccgt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aggctcagaggcaggcactttcccctcagagcctcctggctggctcctggttccatccgt 744
Query: 545 gagctgcctgtagtttatcccggctctatattatattttaggatcttatatgcttcatcg 604
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 745 gggctgcctgtagtttatcccggctctatatcatattttaggatcttatatgcttcatcg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_o20.g1 MSMg01no079_o20.g1 CHROMAT_FILE:
MSMg01no079_o20.g1 PHD_FILE: MSMg01no079_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:41 2005
(462 letters)
>mm_chr18_13352721_13353582
Length = 862
Score = 818 bits (423), Expect = 0.0
Identities = 452/465 (97%), Gaps = 9/465 (1%)
Strand = Plus / Minus
Query: 1 cagatgaatttgaaattaaaatacaaggaaggaaatccatacttagccataga---tttt 57
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 744 cagatgaatttgaaattaaaatacaaggaaggaaatccatacttagccatagattttttt 685
Query: 58 ttaaaaaaaaatatatatatatattaggggtggccagggcctttctcatgtgaagacaaa 117
|| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct: 684 tt--aaaaaaatatatat---t-ttagaggtggccagggcctttctcatgtgaagacaaa 631
Query: 118 ggcagaaactaaaaagttaatattggtaattagacttcattaaaatttaaagttctggag 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ggcagaaactaaaaagttaatattggtaattagacttcattaaaatttaaagttctggag 571
Query: 178 agaaaatcatggctaaaagaaattaaatttgggaaaagatattcctcaagttttactaaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agaaaatcatggctaaaagaaattaaatttgggaaaagatattcctcaagttttactaaa 511
Query: 238 gagtattcagtagcttcaatgtgatacagttatcgtataactttatctgaagaactgaaa 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 510 gagtattcagtagcttcaatgtgatacagttatcatataactttatctgaagaactgaaa 451
Query: 298 gccacccagagacacacacaaataaatgtatggggcctttcagaaacgaaaaccataaag 357
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 450 gccacccagagacacacacaaataaatatatggggcctttcagaaatgaaaaccataaag 391
Query: 358 tgtcagaaagcaaaacagatccctggtcttgctagtaacatgcccaaaagaatatgtata 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tgtcagaaagcaaaacagatccctggtcttgctagtaacatgcccaaaagaatatgtata 331
Query: 418 gacatacagaaaagaatctagaaagacagacaccaacgtgctcat 462
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gacatacagaaaagaatctagaaagacagacaccaacgtgctcat 286
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
