BAC Information

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BAC

Clone NameMSMg01-082L04
Chromosome18 (Build37)
Map Location 71,133,889 - 71,134,067
singlet/doubletsinglet
Overlap genenone
Upstream geneRab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082L04.T7 (MSMg01no082_l04.b1)MSMg01-082L04.TJ (MSMg01no082_l04.g1)
ACCAG303005AG303006
length712697
length of high quality
(start - end)
49 (175 - 223)180 (75 - 254)
definitionCHROMAT_FILE: MSMg01no082_l04.b1 PHD_FILE: MSMg01no082_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:14 2005CHROMAT_FILE: MSMg01no082_l04.g1 PHD_FILE: MSMg01no082_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGATCCGCGGAA
TTCAAAATTCCTCAACTGCTTACCTGCTTTCCAATGCAACTGCAAACTTA
TGGTTGCACGCTATAGCATTATATCATTTCTCTTACATACTTAGATTTAA
AAAAAATCCACATGTCAGACCGCTATATTTATCTCACACATTTTCATATA
ACCCAATCCACTTTCTACTCCCACTTAAACCAAACAAACCTTTACTTACA
CAACCAATAGAAACAATGCTGACACTATATCTGTAATGTAACAATTTGAT
AAGTGCACGATCCATGTCTACACCCATGATATTCCTAAAGTTGGACTAAA
CAGCAATACGGACAAATCCGAGACTAACATCACCAACTGTTCCTTCCTTT
TAAATTCATCGACTATTCTACCCTTCATTACAATACAATAAAGCTTACTT
ATTTCAGGTCAATTGAAACAACTCAATTTCATCTAATATCTTTTATTTTA
TTAATCAGCTAAATCCTCCTTATCTATTATTATTCAAATATATTTGAAAG
CTCTTGCACCCATTGAATAACCCCAAAATAAGAAAAAAAAATATCGTTAT
CTCTTCAAATTAACCATTACAAATCAACATTCACCATTTAATTCTTCACC
TTCCTTCTTACCTCCCCTTTTCTTCCCTTTTTTTTTTATCTTAGATTTGA
AATGAGTTTTTA
CAATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAGTCTATGAGCTCATGAGAACATTCTT
ATTCAAACTACCACACACATTAAGCATATATGAAATGAACAGAGTGATAT
GAGTGTGCAGAGACATGAGCAGGCAGAAGACAACTTCATTGATCATTGAT
GAAGGTGAAAGCAAAAAGCAAATAACACAGTTTTCATGGAAATGGGAAAA
ATACAAAATTTATAAAGATTGTTAAGTTTTGAATTATTATAAATTATAAC
AATGACGAAGGGGGAAGGACTATAGCTCTACTAAATTGCTCACCTAAGCT
ACAGTTCTCTTTAGCTGTATTTTATCGTTAGTTATACCCACCAAGAATTT
ATACGTTTTATATTTTTCCCACATTTTAATGTCTCACATACTGATATTCA
GTCTCTAATCTAGGGGATGTCACAATCCTCTTAGCATTTCCTTCTCTTTG
ACAGTACCCCGTGCTCCTCATAGCCCTTTCCCCCCAGTTTGATATCGAGT
CTACGACCTCAAATGCGTACCCTACTTTCCCCGTACTCCTCACACATGTA
ATACACTTACTTCTCCAAAATCCCCAGCCTCCTCCTTATCTTCCCTAAGG
AAGCCTCCGAATACTATCTTGGAAAACTTTACTGCCCCGTATGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_l04.g1 MSMg01no082_l04.g1 CHROMAT_FILE:
MSMg01no082_l04.g1 PHD_FILE: MSMg01no082_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:14 2005
         (180 letters)



>mm_chr18_71133648_71134227
          Length = 580

 Score =  323 bits (167), Expect = 4e-93
 Identities = 176/179 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   tctatgagctcatgagaacattcttattcaaactaccacacacattaagcatatatgaaa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tctatgagctcatgagaacattcttattcaaactaccacacacattaagcatatatgaaa 361

                                                                       
Query: 62  tgaacagagtgatatgagtgtgcagagacatgagcaggcagaagacaacttcattgatca 121
           ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 360 tgaacggagtgatatgagtctgcagagacatgagcaggtagaagacaacttcattgatca 301

                                                                      
Query: 122 ttgatgaaggtgaaagcaaaaagcaaataacacagttttcatggaaatgggaaaaatac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ttgatgaaggtgaaagcaaaaagcaaataacacagttttcatggaaatgggaaaaatac 242


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)