BAC Information

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BAC

Clone NameMSMg01-083N23
Chromosome18 (Build37)
Map Location 88,829,730 - 88,914,267
singlet/doubletdoublet
Overlap geneLOC665497
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083N23.T7 (MSMg01no083_n23.b1)MSMg01-083N23.TJ (MSMg01no083_n23.g1)
ACCAG303878AG303879
length714714
length of high quality
(start - end)
670 (39 - 708)556 (67 - 622)
definitionCHROMAT_FILE: MSMg01no083_n23.b1 PHD_FILE: MSMg01no083_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:44 2005CHROMAT_FILE: MSMg01no083_n23.g1 PHD_FILE: MSMg01no083_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,829,730 - 88,830,396)(88,913,709 - 88,914,267)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GGTTCAGCAAGATGCCCTGTCTCAAAGCAAATGATAAATAAATTGGGTAG
AGTGTAATAGAGGAAAATACCTACTTCCAAGCTCATGTACACAAACATGT
ATACTCATATACATCACAAACACAGAAGAAAGTAATTTTTAAAAAGTGGA
TGCAAATCTGTAAGCAAGTAGAATAACTCAATTAGGAACTCTACCCAAAC
TGAAATATTCAAAAAATAAAATTTTGTATTTATGATAGCTACCTGTTCTC
AATTACACAGTTGAGTTTTATAAGTCAAGTGGAAGAACAAACTAAATTGC
CCAGTGTAAATTGGTGGCTAAATAAGGAAACAAGGCAACCAACATGCAGC
AGAATATGCGCAAATATTCATTTGTGCAAATATATACTCAATTTGTGAGC
ATTTAGACCCATAATTGATATAGACCTTAGATGTGTTATAAACTGATTAC
AAGTAAACCACTGAGAGCATCGAAATACAGGGAATGTGACTCTGGAAGCA
AACCACAACATGAGCTGCCTTGTTCACATGGGTTCCATTTAAATATTTAA
ATGATATTCTAAAATGAACCACTAACTCCTGACCTACTTTCCAAAGAGCT
TTGTTGAGAAGATAAAATAGGATGCACTACTTCTCTACAATATTGTTTCA
AGTGCTATAAAATT
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGACTTTATTTAGTAAAATTGGTTATTGACAATT
TTTGAAAAGAGAATTGACTAATGAACTAAGGTTTTAAGGTGGTTGTTTTA
TGATACAGCTTCCATAGGAGGGGCATGGCTGGATGATATTGAAACATTCC
AGGAATATCTTGCCTTTTATAGAACACGTCACTACTGTAATCTTTGCTAA
GCGGAAAGGGGGATGAACCCTAGCTTGATCCATTGCCAGCCTAGTTTCAT
CTTTAGAATTCTCAGGGGCATTCTACAGTGTCTTTCAAACAGCTGATTTT
CTTTCACCCTGTCCTCATAATTTTGTTTTCTTTTTCTAGACATTACAACC
TAATTAAAATTGTTGTCACAGTGGCAAAGTCAGAGCTTGGGCACTGGTGA
CAACTTCTCAGTTTCTTATATGTCCATGAGCAGACTTAAATCTTAAATAC
ATTTCTAATGGACACCATGGTCTCCATTTTCTCTCTGACTGCATCTGTCC
AAACCTCCATCATCTATTTGCATTTTATTTATTTTATTGCTGTTTCCCAT
TTACATTTAACACACACACACACACACACACACACACACACTCACACACA
CACACACACACACACACGATAGATTTAAGAAAGTAAATGTCACTTTTACT
TCCTCAGTTGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_n23.b1 MSMg01no083_n23.b1 CHROMAT_FILE:
MSMg01no083_n23.b1 PHD_FILE: MSMg01no083_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:44 2005
         (670 letters)



>mm_chr18_88829527_88830596
          Length = 1070

 Score = 1243 bits (643), Expect = 0.0
 Identities = 661/667 (99%), Gaps = 1/667 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggttcagcaagatgccctgtctcaaa-gcaaatgataaataaattgggtaga 63
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 gaattccaggttcagcaagatgccctgtctcaaaagcaaatgataaataaattgggtaga 263

                                                                       
Query: 64  gtgtaatagaggaaaatacctacttccaagctcatgtacacaaacatgtatactcatata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgtaatagaggaaaatacctacttccaagctcatgtacacaaacatgtatactcatata 323

                                                                       
Query: 124 catcacaaacacagaagaaagtaatttttaaaaagtggatgcaaatctgtaagcaagtag 183
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catcgcatacacagaagaaagtaatttttaaaaagtggatgcaaatctgtaagcaagtag 383

                                                                       
Query: 184 aataactcaattaggaactctacccaaactgaaatattcaaaaaataaaattttgtattt 243
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 384 aataactcaattaggaactctacccaaacttaaatattcaaaaaataaatttttgtattt 443

                                                                       
Query: 244 atgatagctacctgttctcaattacacagttgagttttataagtcaagtggaagaacaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgatagctacctgttctcaattacacagttgagttttataagtcaagtggaagaacaaa 503

                                                                       
Query: 304 ctaaattgcccagtgtaaattggtggctaaataaggaaacaaggcaaccaacatgcagca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctaaattgcccagtgtaaattggtggctaaataaggaaacaaggcaaccaacatgcagca 563

                                                                       
Query: 364 gaatatgcgcaaatattcatttgtgcaaatatatactcaatttgtgagcatttagaccca 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaatatgtgcaaatattcatttgtgcaaatatatactcaatttgtgagcatttagaccca 623

                                                                       
Query: 424 taattgatatagaccttagatgtgttataaactgattacaagtaaaccactgagagcatc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taattgatatagaccttagatgtgttataaactgattacaagtaaaccactgagagcatc 683

                                                                       
Query: 484 gaaatacagggaatgtgactctggaagcaaaccacaacatgagctgccttgttcacatgg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaaatacagggaatgtgactctggaagcaaaccacaacatgagctgccttgttcacatgg 743

                                                                       
Query: 544 gttccatttaaatatttaaatgatattctaaaatgaaccactaactcctgacctactttc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gttccatttaaatatttaaatgatattctaaaatgaaccactaactcctgacctactttc 803

                                                                       
Query: 604 caaagagctttgttgagaagataaaataggatgcactacttctctacaatattgtttcaa 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caaagagctttgttgagaagataaaataggatgcactacttctctacaatattgtttcaa 863

                  
Query: 664 gtgctat 670
           |||||||
Sbjct: 864 gtgctat 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no083_n23.g1 MSMg01no083_n23.g1 CHROMAT_FILE:
MSMg01no083_n23.g1 PHD_FILE: MSMg01no083_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:44 2005
         (556 letters)



>mm_chr18_88913509_88914467
          Length = 959

 Score = 1019 bits (527), Expect = 0.0
 Identities = 551/561 (98%), Gaps = 7/561 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactttatttagtaaaattggttattgacaatttttgaaaagagaattgactaatgaac 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgacttt-tttagtaaaattggttattgacaatttttgaaaagagaattgactaatgaac 701

                                                                       
Query: 61  taaggttttaaggtggttgttttatgatacagcttccataggaggggcatggctggatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 taaggttttaaggtggttgttttatgatacagcttccataggaggggcatggctggatga 641

                                                                       
Query: 121 tattgaaacattccaggaatatcttgccttttatagaacacgtcactactgtaatc---- 176
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
Sbjct: 640 tattgaaacattccaggaatatcttgccttttatagaacacgtcgctactgtaatctttg 581

                                                                       
Query: 177 tttgctaagcggaaagggggatgaaccctagcttgatccattgccagcctagtttcatct 236
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tttgctaagcggaaagggagatgaaccctagcttgatccattgccagcctagtttcatct 521

                                                                       
Query: 237 ttagaattctcaggggcattctacagtgtctttcaaacagctgattttctttcaccctgt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttagaattctcaggggcattctacagtgtctttcaaacagctgattttctttcaccctgt 461

                                                                       
Query: 297 cctcataattttgttttctttttctagacattacaacctaattaaaattgttgt-cacag 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 460 cctcataattttgttttctttttctagacattacaacctaattaaaattgttgtcca-ag 402

                                                                       
Query: 356 tggcaaagtcagagcttgggcactggtgacaacttctcagtttcttatatgtccatgagc 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tggcaaagtcagagcttgggcactggtgacaacttctcagtttcttatatgtccatgagc 342

                                                                       
Query: 416 agacttaaatcttaaatacatttctaatggacaccatggtctccattttctctctgactg 475
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 341 agacttaaatcttaaatacatttctaatggaaaccatggtctccattttctctctgactg 282

                                                                       
Query: 476 catctgtccaaacctccatcatctatttgcattttatttattttattgctgtttcccatt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 catctgtccaaacctccatcatctatttgcattttatttattttattgctgtttcccatt 222

                                
Query: 536 tacatttaacacacacacaca 556
           |||||||||||||||||||||
Sbjct: 221 tacatttaacacacacacaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 959
Length adjustment: 10
Effective length of query: 546
Effective length of database: 949
Effective search space:   518154
Effective search space used:   518154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)