Query= MSMg01no083_n23.b1 MSMg01no083_n23.b1 CHROMAT_FILE:
MSMg01no083_n23.b1 PHD_FILE: MSMg01no083_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:44 2005
(670 letters)
>mm_chr18_88829527_88830596
Length = 1070
Score = 1243 bits (643), Expect = 0.0
Identities = 661/667 (99%), Gaps = 1/667 (0%)
Strand = Plus / Plus
Query: 5 gaattccaggttcagcaagatgccctgtctcaaa-gcaaatgataaataaattgggtaga 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 gaattccaggttcagcaagatgccctgtctcaaaagcaaatgataaataaattgggtaga 263
Query: 64 gtgtaatagaggaaaatacctacttccaagctcatgtacacaaacatgtatactcatata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgtaatagaggaaaatacctacttccaagctcatgtacacaaacatgtatactcatata 323
Query: 124 catcacaaacacagaagaaagtaatttttaaaaagtggatgcaaatctgtaagcaagtag 183
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 catcgcatacacagaagaaagtaatttttaaaaagtggatgcaaatctgtaagcaagtag 383
Query: 184 aataactcaattaggaactctacccaaactgaaatattcaaaaaataaaattttgtattt 243
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 384 aataactcaattaggaactctacccaaacttaaatattcaaaaaataaatttttgtattt 443
Query: 244 atgatagctacctgttctcaattacacagttgagttttataagtcaagtggaagaacaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgatagctacctgttctcaattacacagttgagttttataagtcaagtggaagaacaaa 503
Query: 304 ctaaattgcccagtgtaaattggtggctaaataaggaaacaaggcaaccaacatgcagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctaaattgcccagtgtaaattggtggctaaataaggaaacaaggcaaccaacatgcagca 563
Query: 364 gaatatgcgcaaatattcatttgtgcaaatatatactcaatttgtgagcatttagaccca 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaatatgtgcaaatattcatttgtgcaaatatatactcaatttgtgagcatttagaccca 623
Query: 424 taattgatatagaccttagatgtgttataaactgattacaagtaaaccactgagagcatc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taattgatatagaccttagatgtgttataaactgattacaagtaaaccactgagagcatc 683
Query: 484 gaaatacagggaatgtgactctggaagcaaaccacaacatgagctgccttgttcacatgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaaatacagggaatgtgactctggaagcaaaccacaacatgagctgccttgttcacatgg 743
Query: 544 gttccatttaaatatttaaatgatattctaaaatgaaccactaactcctgacctactttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gttccatttaaatatttaaatgatattctaaaatgaaccactaactcctgacctactttc 803
Query: 604 caaagagctttgttgagaagataaaataggatgcactacttctctacaatattgtttcaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 caaagagctttgttgagaagataaaataggatgcactacttctctacaatattgtttcaa 863
Query: 664 gtgctat 670
|||||||
Sbjct: 864 gtgctat 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no083_n23.g1 MSMg01no083_n23.g1 CHROMAT_FILE:
MSMg01no083_n23.g1 PHD_FILE: MSMg01no083_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:44 2005
(556 letters)
>mm_chr18_88913509_88914467
Length = 959
Score = 1019 bits (527), Expect = 0.0
Identities = 551/561 (98%), Gaps = 7/561 (1%)
Strand = Plus / Minus
Query: 1 tgactttatttagtaaaattggttattgacaatttttgaaaagagaattgactaatgaac 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 tgacttt-tttagtaaaattggttattgacaatttttgaaaagagaattgactaatgaac 701
Query: 61 taaggttttaaggtggttgttttatgatacagcttccataggaggggcatggctggatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 taaggttttaaggtggttgttttatgatacagcttccataggaggggcatggctggatga 641
Query: 121 tattgaaacattccaggaatatcttgccttttatagaacacgtcactactgtaatc---- 176
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 640 tattgaaacattccaggaatatcttgccttttatagaacacgtcgctactgtaatctttg 581
Query: 177 tttgctaagcggaaagggggatgaaccctagcttgatccattgccagcctagtttcatct 236
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 tttgctaagcggaaagggagatgaaccctagcttgatccattgccagcctagtttcatct 521
Query: 237 ttagaattctcaggggcattctacagtgtctttcaaacagctgattttctttcaccctgt 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ttagaattctcaggggcattctacagtgtctttcaaacagctgattttctttcaccctgt 461
Query: 297 cctcataattttgttttctttttctagacattacaacctaattaaaattgttgt-cacag 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 460 cctcataattttgttttctttttctagacattacaacctaattaaaattgttgtcca-ag 402
Query: 356 tggcaaagtcagagcttgggcactggtgacaacttctcagtttcttatatgtccatgagc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tggcaaagtcagagcttgggcactggtgacaacttctcagtttcttatatgtccatgagc 342
Query: 416 agacttaaatcttaaatacatttctaatggacaccatggtctccattttctctctgactg 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 341 agacttaaatcttaaatacatttctaatggaaaccatggtctccattttctctctgactg 282
Query: 476 catctgtccaaacctccatcatctatttgcattttatttattttattgctgtttcccatt 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 catctgtccaaacctccatcatctatttgcattttatttattttattgctgtttcccatt 222
Query: 536 tacatttaacacacacacaca 556
|||||||||||||||||||||
Sbjct: 221 tacatttaacacacacacaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 959
Length adjustment: 10
Effective length of query: 546
Effective length of database: 949
Effective search space: 518154
Effective search space used: 518154
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|