BAC Information

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BAC

Clone NameMSMg01-084J08
Chromosome18 (Build37)
Map Location 55,813,627 - 55,814,113
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084J08.T7 (MSMg01no084_j08.b1)MSMg01-084J08.TJ (MSMg01no084_j08.g1)
ACCAG304394AG304395
length701761
length of high quality
(start - end)
545 (36 - 580)487 (121 - 607)
definitionCHROMAT_FILE: MSMg01no084_j08.b1 PHD_FILE: MSMg01no084_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:39 2005CHROMAT_FILE: MSMg01no084_j08.g1 PHD_FILE: MSMg01no084_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATAGTCAGAGAATCCGCGGAATTCTCTTGC
CTCTACCTCCAGAGCCCTGGGATTACAGACATATGTTTATTTAAATTTAT
ATCTGGAATTTACCATGTCTGGTTTCTGCAGTGCTAGGGGTGGAATCTAG
CATCTTCTTTATGCCAGGCAAGCACTCTTCCAGCTCAGCCCTCTCTCCAG
TTCCTAAACACACATTTCTTAAAAGACAAGATAGAAATAGCTAGTGGATA
ATAAAATAAAAAAAAATCACCTGTGAAATGCAATTAAAATCTTGATAAGA
CATAACCACATACCTTTCAAAATAGCTTTTAGAAAAAAAAATATAAATGT
TGCCAAATGACTTTCGAAAGAGGGAACTTTTGTGTACTTTAGGTAGTAAT
GCTAATTGGAATCGCTGTTCTGAGGAACACGGTGGATGACCATCAGACTA
TCCCAAGCGGGTAGCAGACGGATCAAGCAGTATGCCTTTTGTGTATTTCT
CTAAAATGAACATTTCCAAAACCTCAATCTTGGATGTGCCATCTCTTAGA
GTGAAACACAACCCCATTTCCTCCTCTGATCACAGTGTTTAGAATAACCC
AAAATAAATAACTAAATAAATAAATAAATAAATAAATAAATAAATAAATA
AAAACATCTCTGTTCCTGAAGGCTCAGGGTTTGTGAATGTTTGTGGAAGA
A
TTTTTTTTTTTTTTTTTTNNNNNTTTTTTTTTTTTTNNTNNNNTCAAAAA
CACCTGATGATATGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTAGAGAGTCTTACAAAAGAAAGTAATGC
ATATATTGGAAAAAAAGTATCTTAGACGGTGTTAAAATATAATATAAAGT
CTCAATGATTAAGGCAGGTTTGTATCATTTCAGACAGGCATGTTTATCTC
CACAAATGTAGTGTGTGATGGGAGGCTGCATCTCCAGGCAGCAGGAATGA
GGACGTCGTCATGGCAATGACTTTGGGACGCAGTCCAGCCACCTGAAAAG
GTAAAAGTGTCATCTTCTTCCCGTCTCACACCACATCCATGCATGAACGA
TCCAGAACATAAATATTTTAAATGAAAAACTAAAATGATAAGAATGTAAG
TGTGAGTATGTTTATATTCTGGAGACAGGGATGTTTAGAAATATAGACAA
AGCACAATCTAGGGGCAAATGCAAGGTTAACGTACTTGTCTACATGAGTT
GTTTAAGAGAGCTTGTTTGCAGCTAAAGAAGCAGAGTAAAAAGCAAGTAT
CAGGCAGATGAAATTACCCAGAGCTTATGTGAGAACTAGCACCTCCTGGC
ACGTAAAAGAGCTCTGACAAACTGTGAAAGGGAAGTCTAGGTGACAGCAT
GGAAAATATCAAGTGGGAAGTACAGGCAACTTTGTATTAGAAAAATTCTA
GTGTTTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_j08.g1 MSMg01no084_j08.g1 CHROMAT_FILE:
MSMg01no084_j08.g1 PHD_FILE: MSMg01no084_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:39 2005
         (487 letters)



>mm_chr18_55813427_55814313
          Length = 887

 Score =  919 bits (475), Expect = 0.0
 Identities = 484/487 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagagagtcttacaaaagaaagtaatgcatatattggaaaaaaagtatcttagacggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cctagagagtcttacaaaagaaagtaatgcatatattggaaaaaaagtatcttagacggt 628

                                                                       
Query: 61  gttaaaatataatataaagtctcaatgattaaggcaggtttgtatcatttcagacaggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gttaaaatataatataaagtctcaatgattaaggcaggtttgtatcatttcagacaggca 568

                                                                       
Query: 121 tgtttatctccacaaatgtagtgtgtgatgggaggctgcatctccaggcagcaggaatga 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 567 tgtttatctccacaaatgtagtgtgtgataggaggctgcatctccaggcagcaggaatga 508

                                                                       
Query: 181 ggacgtcgtcatggcaatgactttgggacgcagtccagccacctgaaaaggtaaaagtgt 240
           |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggacatcgtcatggcgatgactttgggacgcagtccagccacctgaaaaggtaaaagtgt 448

                                                                       
Query: 241 catcttcttcccgtctcacaccacatccatgcatgaacgatccagaacataaatatttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catcttcttcccgtctcacaccacatccatgcatgaacgatccagaacataaatatttta 388

                                                                       
Query: 301 aatgaaaaactaaaatgataagaatgtaagtgtgagtatgtttatattctggagacaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aatgaaaaactaaaatgataagaatgtaagtgtgagtatgtttatattctggagacaggg 328

                                                                       
Query: 361 atgtttagaaatatagacaaagcacaatctaggggcaaatgcaaggttaacgtacttgtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atgtttagaaatatagacaaagcacaatctaggggcaaatgcaaggttaacgtacttgtc 268

                                                                       
Query: 421 tacatgagttgtttaagagagcttgtttgcagctaaagaagcagagtaaaaagcaagtat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tacatgagttgtttaagagagcttgtttgcagctaaagaagcagagtaaaaagcaagtat 208

                  
Query: 481 caggcag 487
           |||||||
Sbjct: 207 caggcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)