BAC Information

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BAC

Clone NameMSMg01-088D11
Chromosome18 (Build37)
Map Location 80,409,266 - 80,409,473
singlet/doubletsinglet
Overlap geneTxnl4
Upstream geneLOC100039242, LOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik
Downstream gene1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389, LOC100039336, A430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D11.T7 (MSMg01no088_d11.b1)MSMg01-088D11.TJ (MSMg01no088_d11.g1)
ACCAG307033AG307034
length701692
length of high quality
(start - end)
234 (117 - 350)177 (105 - 281)
definitionCHROMAT_FILE: MSMg01no088_d11.b1 PHD_FILE: MSMg01no088_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:36 2005CHROMAT_FILE: MSMg01no088_d11.g1 PHD_FILE: MSMg01no088_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTC
AATGCAGTCATCTAGGCTTGAATTTTTCCATGTTTCTTCTGGTATAGTAT
AATTTTCTGCGCTGTACACTCCACATTTCTTTTTTTTTTTTTTCCTTTTT
ATATTTTTATTTTTTCAGGTTAGAGAATGCAATTTAATTTCTGCGTGTTC
TTTCCTTAGAGCTACAAATTCTGCTTGTGTACTAGTCTAACACCTATCAC
CTTCTCCCTCAGGAAAGGGACCATTCTTCTTCAAAAAGAGGGAGGGCCGG
GCAGGGTAGTTTCCACAGAAAGCAAGGGCAGTACTTGATGATTCTACTCC
AAGGAAAACAAACAAACAAACAGATAAATAATGCAAAGGCTGGAAGTTGG
GTACCCCCAGATGTCCCCACTTCTTGTTTGGCATTCCAAGCTTAATGTTG
CAGTACTCAGTCAGAACAGTTTTGATCATCATGTGACGGCAGCGTGCATA
ACCCCAAATAGGTTTGCATGCCTTTCCTCGGTCTGGCTTTCCTTGACTCC
CGCACATAAGTGTCTGTGTCTAGGTGTGTTTCCATGATCATTCTGTTTAT
ACTTATATTTTCCTTTTAATTCTATCATTCTTTACTTCTCCCGTTCCCTT
TATGGTACCTTCGACCTGTGTTCTGATATTATTGTTTGCCATTGTACTTT
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
AGCTCTGCCTGAACAATGCCTGCTTGGATGCTGCCATGTTTCTACTTTGA
TGATAATGGACCGAACCTCTGAACCAGTAAGCCAGCCCCAATTAAATGTT
GTCCTTACAAGGGTTGCATGGTCATGGTGTCTCTTCACAGCAGTAAAACC
CTGAGACAGAAGTGAAATGAAAAGTTGTGGGCACTAATATTTCTGGTTTG
AGAAATAGAAAGCTGAGGTTGCTGTTGAGAAAATGGAGAATTTTTCAGGA
GCAATAAATCTGAGTTGTGGGACTCAAGGTTCTCTACTTCTACCATGTCC
AGAATTCCCATTACCTGTCTAATTTGACAGGATGGACCGCCCTCCTACAT
GTCTACATAGAAGTCAGCTGAGTAGTCCAAGTTAGAGACTTATGCATGGA
GGCCACCCTAATATAGGATTTTCTGTGTCCTGAGTCTATTATGATTAAAT
AACTCTTACTTGCTTATGTATCATAACACCAGTTATTATTTTTTATTTTG
CGTTTTGCCGCTTATTAAAAAGTAATGGCTGTGTCTACGATATCCCTTAC
CATATGACTCCCCCATCAATTTTTCCCCATTATTTGTGTTTACTTTACAC
CCTCCCCATTTATTTTTTTCCCATTATTTTTCCTCTTATATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d11.b1 MSMg01no088_d11.b1 CHROMAT_FILE:
MSMg01no088_d11.b1 PHD_FILE: MSMg01no088_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:36 2005
         (234 letters)



>mm_chr18_80409017_80409650
          Length = 634

 Score =  395 bits (204), Expect = e-114
 Identities = 207/208 (99%)
 Strand = Plus / Minus

                                                                       
Query: 27  tcctttttatatttttattttttcaggttagagaatgcaatttaatttctgcgtgttctt 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tcctttttatatttttattttttcaggttagagaatgcaatttaatttctgcgtgttctt 398

                                                                       
Query: 87  tccttagagctacaaattctgcttgtgtactagtctaacacctatcaccttctccctcag 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tccttagagctacaaattctgcttgtgtactagtctaacacctatcaccttctccctcag 338

                                                                       
Query: 147 gaaagggaccattcttcttcaaaaagagggagggccgggcagggtagtttccacagaaag 206
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 337 gaaagggaccattcttcttcaaaaagagggagggccgggcagggcagtttccacagaaag 278

                                       
Query: 207 caagggcagtacttgatgattctactcc 234
           ||||||||||||||||||||||||||||
Sbjct: 277 caagggcagtacttgatgattctactcc 250


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)