Query= MSMg01no088_p22.b1 MSMg01no088_p22.b1 CHROMAT_FILE:
MSMg01no088_p22.b1 PHD_FILE: MSMg01no088_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:39 2005
(558 letters)
>mm_chr18_13548645_13549602
Length = 958
Score = 822 bits (425), Expect = 0.0
Identities = 511/575 (88%), Gaps = 59/575 (10%)
Strand = Plus / Minus
Query: 5 gaattccaggccagtgcgagaccccatctttaaaaacaa----ttttttaaaaaaaaatg 60
|||||||||||||||| |||||||||||||||||||||| |||||| |||||
Sbjct: 944 gaattccaggccagtgagagaccccatctttaaaaacaatttttttttt------aaatg 891
Query: 61 tggactatgtctgaataacaacacctgcatccacccacacatatatgtgcacctgtacac 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 tggactatgtctgaat---aacacctgcatccacccacacatatatgtgcacctgtacac 834
Query: 121 acatgagcacacacacacacaggcacacacacacacacacgtgtgtgtgtgtgtgtgtgc 180
|||||||||||||||||||||||||||||||||||||||| |
Sbjct: 833 acatgagcacacacacacacaggcacacacacacacacac------------------ac 792
Query: 181 -----------------ctgtgtgtgtgtgtgtgtgtgtgtgtgaaagaactgaaagcaa 223
| |||||||||||||||||||||||||||||||
Sbjct: 791 acacacacacacacacac-----------gtgtgtgtgtgtgtgaaagaactgaaagcaa 743
Query: 224 tgtcttctaaagtcattattggggttttcacatcaagaactaagaatggaaggaaccaat 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgtcttctaaagtcattattggggttttcacatcaagaactaagaatggaaggaaccaag 683
Query: 284 aaacaggctgagggaggtgggaattagatgagatttgttcaagaacagatttaaaacatt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaacaggctgagggaggtgggaattagatgagatttgttcaagaacagatttaaaacatt 623
Query: 344 ttgctttttttccccctcgaaacaacttactttgtaatcattgccttggcatctagcctc 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 622 ttgctttttttccccctcgaaacaacttactttgtaatcattgccttggcatctggcctc 563
Query: 404 ctctcatttaacctcatctgcctgactttaaattcatggaacagattttcactgccctgg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctctcatttaacctcatctgcctgactttaaattcatggaacagattttcactgccctgg 503
Query: 464 attccacgcagttggccggcagagtgttcttggatgttaccaaaaaaaggcatttgatac 523
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attccgcgcagttggccggcagagtgttcttggatgttaccaaaaaaaggcatttgatac 443
Query: 524 tattaatcatattgccatatgtaataaattggctg 558
|||||||||||||||||||||||||||||||||||
Sbjct: 442 tattaatcatattgccatatgtaataaattggctg 408
Score = 101 bits (52), Expect = 2e-25
Identities = 60/64 (93%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 146 cacacacacacacacgtgtgtgtgtgtgtgtgtgcctgtgtgtgtgtgtgtgtg--tgtg 203
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 759 cacacacacacacacgtgtgtgtgtgtgtgtgtg--tgtgtgtgtgtgtgtgtgcctgtg 816
Query: 204 tgtg 207
||||
Sbjct: 817 tgtg 820
Score = 70.3 bits (36), Expect = 3e-16
Identities = 42/46 (91%), Gaps = 4/46 (8%)
Strand = Plus / Plus
Query: 161 gtgtgtgtgtgtgtgtgtgcctgtgtgtgtgtgtg----tgtgtgt 202
||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 792 gtgtgtgtgtgtgtgtgtgcctgtgtgtgtgtgtgctcatgtgtgt 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_p22.g1 MSMg01no088_p22.g1 CHROMAT_FILE:
MSMg01no088_p22.g1 PHD_FILE: MSMg01no088_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:39 2005
(262 letters)
>mm_chr18_13485835_13486496
Length = 662
Score = 472 bits (244), Expect = e-137
Identities = 256/260 (98%)
Strand = Plus / Plus
Query: 1 aaacagacttgtgttagccccactcctggaagcatacttattacctagggagagaatagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacagacttgtgttagccccactcctggaagcatacttattacctagggagagaatagt 260
Query: 61 caccttctagaaagggtcatagaatgtccaaattgctttggaagaataggttctgggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccttctagaaagggtcatagaatgtccaaattgctttggaagaataggttctgggagg 320
Query: 121 aagtaatagtgtcatagacagaaatctaaggccttcctagctctcaacagcaccatacac 180
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 321 aagtaatagtgtcatagacagaaatccaaggccttcctaactctcaacagcaccatacac 380
Query: 181 ctgtggatggttgagtcctatgttgatcattattcttgtgtgtgtgtgtgtgtgtgtgtg 240
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 381 ctgtggatggttgagtcctatgttgatcattattctggtgtttgtgtgtgtgtgtgtgtg 440
Query: 241 tgtgtgtgtgtgtgtgtgtg 260
||||||||||||||||||||
Sbjct: 441 tgtgtgtgtgtgtgtgtgtg 460
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
