BAC Information

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BAC

Clone NameMSMg01-090O01
Chromosome18 (Build37)
Map Location 84,311,820 - 84,312,304
singlet/doubletsinglet
Overlap genenone
Upstream gene4921531P14Rik, LOC665284, Tshz1, Zadh2, LOC669856
Downstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090O01.T7 (MSMg01no090_o01.b1)MSMg01-090O01.TJ (MSMg01no090_o01.g1)
ACCAG308982AG308983
length682691
length of high quality
(start - end)
491 (17 - 507)286 (56 - 341)
definitionCHROMAT_FILE: MSMg01no090_o01.b1 PHD_FILE: MSMg01no090_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:11 2005CHROMAT_FILE: MSMg01no090_o01.g1 PHD_FILE: MSMg01no090_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTATTCGGAGAGGATCCGCGGAATTCCCTCACTGCAGCATTTGAAAC
ATCCCTGTCTCTAGAAGCCACACTCCCCACACTCTATTTCCCCAGTGCCT
GTGGAAACTTTGGCCTTACAAACTACTACTTGACGATGGGGAAAGTACTT
GAAATTGGGGTTTCCCAGGAATCCAGATGCACCAAGTTGAAATGCTCCAT
TGCTCTCCATGTACTCTTCAGCTAGCAGTAAATGACCACTCTGACTGCTT
TTGACCCTGCTGAGCCTTCCGCACTGGGGCTTCCTTAGCCTACAGGACAC
GCGTGGGTCCTTCAGTTCATGGTGTACCCTGGATGTCTCTTCTGTGGCCT
TGTGGGACACACCTGCTACTCTCCGGCCCTCAGCATGGGCAGATCCACAC
AGAACTTGACTCTTATCTCTTCCCTGAGTTCTCGCCCCTCAGTGACCCAG
GCCCTGCGCTTCCTGTGCTCATAGAGTCAGGCTCACACGGGTGGTCCGAT
GGATCAGTGAGTTGATGGGTGTCTGCTCGGCTTCCTGGGGTGTAGCACAA
GAGGATAGCCCTCAGCTAAGCCAGCCTTGTCCTCACTGGGGTTTCTTTTA
AGGTCGTCAGGAAAGGAGGCTGCCAGCCCTGTGCGCAGGTGGCTTGATCC
TGCAGACGAAAGCCAGAGGAGAACCCACTTCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTGTCCTGACTTACTTTGGTGATGAACAGCAGTGTGGAGGTATAA
GCTGAATAAATCCTTTCCTCCCCAGATTGATTCTTGGTCATAATGTTTTG
TGCAGGAATACAAACCCTGAGTAAGACAAAAGATCATGTGTGTATCCCAG
ACATTGAAACAAGAAGCTGCCTTGGAGACCCCAAGATGTTCAAGATGCTA
GAGCCATTGGCTATCTGCTGAAGAAAACTGCTAACAGGGAGTGGAACCAT
CCCATCAGAAAGAAGTTTGTTGCAGTCAGTGCAGATGAATTTTGAGTGAA
CATCTCACCACTGCTTTGACATCAGACATGGACATGCAGAGCTTGTCTGT
CTAGCTGAATTCCTGTCTTGCTTTGGGGCTTCTAGTTAAGTGATTGGATG
AATCTCAGAAGAGACTTTGAACTTTCGACTTTTAACATTGTTGAGACTGC
TATAGACTATGGGGACCTTTGAAGTTGGACTAAATGCATTTTTGCATTAT
ACTATGTTTAGGTATTGCCCCCCCCATAGACTCATATGTTTGAACAAGCC
TATGCGGGCCCAGGAGTGGAATGTGGCAATTTGTTTACGCTCCTGCAAGG
AAGCGCACCTATGTACAGGCGGGGCTCTGCCTAAAGTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_o01.b1 MSMg01no090_o01.b1 CHROMAT_FILE:
MSMg01no090_o01.b1 PHD_FILE: MSMg01no090_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:11 2005
         (491 letters)



>mm_chr18_84311614_84312504
          Length = 891

 Score =  907 bits (469), Expect = 0.0
 Identities = 481/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   ggaattccctcactgcagcatttgaaacatccctgtctctagaagccacactccccacac 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ggaattccctcactgcagcatttgaaacatccctgtctctagaagccacactccccacac 632

                                                                       
Query: 67  tctatttccccagtgcctgtggaaactttggccttacaaactactacttgacgatgggga 126
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 631 tctatttccccagtgcctgtgggaactttggccttacaaactactacttgacgatgggga 572

                                                                       
Query: 127 aagtacttgaaattggggtttcccaggaatccagatgcaccaagttgaaatgctccattg 186
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 571 aagtacttgaaattggggtttcccaggaatccagatgcaccaagctgaaatgctccattg 512

                                                                       
Query: 187 ctctccatgtactcttcagctagcagtaaatgaccactctgactgcttttgaccctgctg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctctccatgtactcttcagctagcagtaaatgaccactctgactgcttttgaccctgctg 452

                                                                       
Query: 247 agccttccgcactggggcttccttagcctacaggacacgcgtgggtccttcagttcatgg 306
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agccttctgcactggggcttccttagcctacaggacacgcgtgggtccttcagttcatgg 392

                                                                       
Query: 307 tgtaccctggatgtctcttctgtggccttgtgggacacacctgctactctccggccctca 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgtaccctggatgtctcttctgtggccttgtgggacacacctgctactctccggccctca 332

                                                                       
Query: 367 gcatgggcagatccacacagaacttgactcttatctcttccctgagttctcgcccctcag 426
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gcgtgggcagatccacacagaacttgactcttatctcttccctgagttctcgcccctcag 272

                                                                       
Query: 427 tgacccaggccctgcgcttcctgtgctcatagagtcaggctcacacgggtggtccgatgg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgacccaggccctgcgcttcctgtgctcatagagtcaggctcacacgggtggtccgatgg 212

                
Query: 487 atcag 491
           |||||
Sbjct: 211 atcag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)