BAC Information

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BAC

Clone NameMSMg01-094I06
Chromosome18 (Build37)
Map Location 5,929,613 - 5,929,890
singlet/doubletsinglet
Overlap genenone
Upstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
Downstream geneArhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094I06.T7 (MSMg01no094_i06.b1)MSMg01-094I06.TJ (MSMg01no094_i06.g1)
ACCAG311666AG311667
length675697
length of high quality
(start - end)
278 (69 - 346)196 (56 - 251)
definitionCHROMAT_FILE: MSMg01no094_i06.b1 PHD_FILE: MSMg01no094_i06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:12 2005CHROMAT_FILE: MSMg01no094_i06.g1 PHD_FILE: MSMg01no094_i06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACACTCCTATATCGAGAGGACCGCGGAATTCTCCTCCTCG
CCTGCTCATGACTAGAATACAGGCACAGATAACCACGTTTGGCTTTTGGG
GTAAGAACATTTCCTGTCTTCATAAACTTTAGTTTTCTCCTTGGGCCAGC
GGAATAACCAATGTGCTTGTCTGCTAGTTCAACCCCTCTTCATCCCCATC
CATATTGTAGCTAATAATTCTCATTTCAATTTTCCCAATTCCATTAGAGA
GAGATGATAATGAAGCTCAAATACGAGGCAGGTTATTCACAGGAAAAGCC
TTTGGCTTTTTAGAAATGCATTGAGATGGTGGGGCGAGTTTTGGGACTCA
TTATGGCTCACCTCTGCTTTACCTGGCATTGTACCTTTTACAGTGTTGTC
AAGGAGAACAATTGTCTGTGCAGGAAGAGGAGGAATCTGTCACATGCTAA
AGGCCCACTAGTGCTACCGGGTGAAAACTTAGAACCCTATGAGCACGAGG
ACATAATCAGACAGTTGCAAACCCTGAGTAGGCTCTGCCCATGCAGGGGC
AGGGCAGGGCAGCTGAGAATTTATCTACTACCCTCTGCACCCAGTCCTGA
GCCCACAGGCCTTGCAATTGAAGCACTTGTGCGCCTTGCGAAGAAACACT
GATCTAATATGCCCTGAGCTATAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGTTTAGCTCTGTAGCCCATTTTTAATGGGGTTATTTGATTTT
TCTGGAGTACAGCTTCTTCAGTTCATTGTATATATTGGATATGACTCCCC
TATAGGATTTAGGATTGGTAAAGATCCTTTCCCAATCTATTGGTGGCCTT
TTTGTGTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGAAATTTTAT
GAGTGTCCCATTTGTGAATTCTTCATCTTACAGCACAATCCATTGAATTT
TTCCCCTGTTGTCTGTACCTTCAAGGGCTTGTCCCCACTTTTTCCTCTAT
TAGTTTTAGTGTCTCTGGTCTTATCTAGCCTTCCTCGATCCACTTAGAGT
TGAGCTTTATTCACAGAGATAAGAAAGGATCAATTCTCATTCTTCTACGT
GATAACCACCAGTTGAGCCATCACCATTTGTTAAAAGTGCTGTCTTTTTT
TTTCCCACTGGATGGTTAAGTGACAATAGGTGTGTGGGTTCATTTCTGAT
TCTTCAGTTATATTCCATTGATCTAGCTGTCTGTCACTGTACAAGTTCCA
TCCAGTTTTTATCACAATTGCTCTGTAGTACAGTTTGAGGTCACGCATGC
TGATTAAACCAGAGGGTCATTATTTGTTGAAAATAGTTTTCACTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_i06.b1 MSMg01no094_i06.b1 CHROMAT_FILE:
MSMg01no094_i06.b1 PHD_FILE: MSMg01no094_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:12 2005
         (278 letters)



>mm_chr18_5929413_5930090
          Length = 678

 Score =  522 bits (270), Expect = e-153
 Identities = 276/278 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggcacagataaccacgtttggcttttggggtaagaacatttcctgtcttcataaact 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 478 acaggcacagataaccacgtttggcttttggggtaagaatatttcctgtcttcataaact 419

                                                                       
Query: 61  ttagttttctccttgggccagcggaataaccaatgtgcttgtctgctagttcaacccctc 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttagttttctccttgggccagtggaataaccaatgtgcttgtctgctagttcaacccctc 359

                                                                       
Query: 121 ttcatccccatccatattgtagctaataattctcatttcaattttcccaattccattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ttcatccccatccatattgtagctaataattctcatttcaattttcccaattccattaga 299

                                                                       
Query: 181 gagagatgataatgaagctcaaatacgaggcaggttattcacaggaaaagcctttggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gagagatgataatgaagctcaaatacgaggcaggttattcacaggaaaagcctttggctt 239

                                                 
Query: 241 tttagaaatgcattgagatggtggggcgagttttggga 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tttagaaatgcattgagatggtggggcgagttttggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)