Query= MSMg01no094_m15.b1 MSMg01no094_m15.b1 CHROMAT_FILE:
MSMg01no094_m15.b1 PHD_FILE: MSMg01no094_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:35 2005
(275 letters)
>mm_chr18_42325576_42326250
Length = 675
Score = 435 bits (225), Expect = e-126
Identities = 255/265 (96%), Gaps = 2/265 (0%)
Strand = Plus / Minus
Query: 12 gtctgtctcacg-acatcctgcctttaagaaagttggtccctgcacccatgctgggcttt 70
|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 475 gtctgtctcaggtacatcctgcctctaagaaagttggtccctgcacccatgctgggcttt 416
Query: 71 tgacagccgtagggccagcctgctctcaagccagaaaatgcccactgtaatctgcacatc 130
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgacag-tgtagggccagcctgctctcaagccagaaaatgcccactgtaatctgcacatc 357
Query: 131 actcctggtgtcatctgagggaaggatgtccctctgagagggaaggcaaggttactcgag 190
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 356 actcctggtgtcatctgagggaaggatgtccctctgagagggaaggcaaggtaactggag 297
Query: 191 accactgtgtgtgtgtcccacaaaaactgtgttggtttgtttgccttttaaacgacattg 250
|||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 296 accattgtgtgtgcgtcccacaaaaaccgtgttggtttgtttgccttttaaacgacattg 237
Query: 251 attgtgatgtagtgcttctgagagt 275
|||||||||||||||||||||||||
Sbjct: 236 attgtgatgtagtgcttctgagagt 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no094_m15.g1 MSMg01no094_m15.g1 CHROMAT_FILE:
MSMg01no094_m15.g1 PHD_FILE: MSMg01no094_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:35 2005
(437 letters)
>mm_chr18_42202056_42202892
Length = 837
Score = 791 bits (409), Expect = 0.0
Identities = 430/437 (98%)
Strand = Plus / Plus
Query: 1 cctaggtagccaaggatgaacctgggctcctaatcctcctgcttctacctccaaagtgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaggtagccaaggatgaacctgggctcctaatcctcctgcttctacctccaaagtgcc 260
Query: 61 aaaattgtaggagtgtgccaccacccccagtaagacctaaaaggtcttactcttattgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aaaattgtaggagtgtgccaccacccccagtaagacctaaaaggtcttactcttattaaa 320
Query: 121 taagatggctagtgtcacttgactccagaggtacatggcttagacaaatagaaagtgcag 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 taagatggctagtgtcacttgactccagaggtgcatggcttagacaaatagaaagtgcag 380
Query: 181 acgttgtcgccgatatcgtttgagcactttctatatggtagctattgttccaagcgatac 240
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgttttcgccaatatcgtttgagcactttctatatggtagctattgttccaagcgatac 440
Query: 241 caatacttattaagaaatgtgttgctcacgaccagcctgagaagtagatgctgttgattg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatacttattaagaaatgtgttgctcacgaccagcctgagaagtagatgctgttgattg 500
Query: 301 caacttttatgggtggggcttggaaatgctgaatacacagagctgatgatggcagagctg 360
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 501 caacttttatgggtggggcttggaaatgctgaacacacagagctgatgatggtagagctg 560
Query: 361 agtattccagagtctccagatgtccagtctcaagccttcttaggaatgtagtaatagttc 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtattccagagtctccagaagtccagtctcaagccttcttaggaatgtagtaatagttc 620
Query: 421 aattaaattgagccatc 437
|||||||||||||||||
Sbjct: 621 aattaaattgagccatc 637
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
