BAC Information

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BAC

Clone NameMSMg01-096C22
Chromosome18 (Build37)
Map Location 26,261,705 - 26,261,904
singlet/doubletsinglet
Overlap genenone
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096C22.T7 (MSMg01no096_c22.b1)MSMg01-096C22.TJ (MSMg01no096_c22.g1)
ACCAG312919AG312920
length782780
length of high quality
(start - end)
199 (182 - 380)429 (130 - 558)
definitionCHROMAT_FILE: MSMg01no096_c22.b1 PHD_FILE: MSMg01no096_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:26 2005CHROMAT_FILE: MSMg01no096_c22.g1 PHD_FILE: MSMg01no096_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTTTTTTTTTTTTTTCCTTCTTTTTTATCCCCCCCCCCCCCCTCAATCC
CTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATGGC
GGAATTCCATCTTGTTTCCAAAAGATGGTAAGACTGGGATGAAGCAGAAT
GTACAGTCCAGACCAAGTATTAAACACCACGTGCAAGGAGCGTGTCTCTT
TTAGCTTGCACAGCTGCTGCAGCCACTTAGGAGGCATCTACTTCCTAAGT
CCAGAATCACTTCTATCAGCACTGGGGATGCTTCTCAGGTAATACTGCAG
ATCCTAGCAAGAGCACAGCTTTGAAATGATGCATGCCTTGATAATATTGC
TTTTTTTTCTTACATTGCTTTGTGTTTAGAGGAAAGAAAATATCATCAAC
AACCACAACAATCCAAATCTTTCAGAAACCTAATTATATGTTTGAGTTAC
AGACTGGCTTTACACAACACCACAATATTAACAAAAAAGGCGGCTCATTA
AGAGCCTTTTGCCTCCCATACAAGTGTGTTTTCATAACTCCATAGAGCAT
GCAAATTCTAATTGCTGGCTTCCTTATTCAGCAAGTCTTCGCGCACCACC
TCCGCAAGCCTCATCACTCTTACACAATTGAGCTCCATTGTATCTTATGT
TTATCGTATCTCCCCTTACTCCACTCTGCTTAAAATGTCTCATCATTCTC
TTCATCCTTTTTTATTATCTCCCCGTACTTTGTGTCTATTGATTCCACTC
TATGCCCACCTGTCCAATCCACGATCCGCGCT
CCCCTTTTTTTTTTTTTCCCTACCTCTCTTCCTTCTCTTCCTCCTTCTTC
CCCCTCCCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCCTCAGGCTCCTCTCTG
TTTCCATCCTTGCAGCTCTTTCATAAAGGAACAATTATGGGTCAGAGATA
TGACTGTGGGATGCTCCCCCTTCCCTCATTTGATGTCCTGTCTTCCTGTT
GAAGGTGGACTCTATAAATTCCCTCTCCCTACTCTTGAGCATTTCAGCTA
AGGTCCATCCCTTTGAGTAGTGAAAGTCTCTCATCTCCCAGGTCTCTGTT
GCATTCTGGAGGGTCCCCTCAACTTCCTATCTCCCGAGGTTGCCTGTTTC
CATTCTTTCTGCTGACCTTCAGGACTTCAGTCCTTTTCCCTCACCCAAAA
CCAGATCAGGTTCCTCTCTCATTCCCACTCCTCTCCCCCACCCCCATCCC
ATCCCCCTCCCCGTTCCCATCCACTTTCCCTCATAGGTCCCTCCTTCCCT
CCCTCCCCACTTGTGATCGCTTTCTTCTGTCTCCCAGGCGGCACTGAGGA
ATCCTTTCCTGGTCCCTTCTGTTTGTTGACTTTTTTGAGTTCTGTGGACT
ATAACTTGGCCATTCCGTACCTTTTTTTCTTAAGAAAAAAATTTATCTGA
GGCTAGCTTATTTTTCGGAGGTCTTCTTCCCTTATTTTATGATTAATTAT
CCGGCCCGAAAATAGGCCACATCCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_c22.b1 MSMg01no096_c22.b1 CHROMAT_FILE:
MSMg01no096_c22.b1 PHD_FILE: MSMg01no096_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:26 2005
         (199 letters)



>mm_chr18_26261505_26262104
          Length = 600

 Score =  340 bits (176), Expect = 3e-98
 Identities = 194/200 (97%), Gaps = 1/200 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaaggagcgtgtctcttttagcttgcacagctgctgcagccacttaggaggcatctac 60
           |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 400 tgcaaggagcatgtctcttttagcttgcacagctgctgtagccacttaggaggcatctac 341

                                                                       
Query: 61  ttcctaagtccagaatcacttctatcagcactggggatgcttctcaggtaatactgcaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttcctaagtccagaatcacttctatcagcactggggatgcttctcaggtaatactgcaga 281

                                                                       
Query: 121 tcctagcaagagcacagctttgaaatgatgcatgccttgataatattgc-ttttttttct 179
           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 280 tcctagcaagatcacagctttgaaatgatgcatgccttgataatattgctttttttttca 221

                               
Query: 180 tacattgctttgtgtttaga 199
           ||||||| ||||||||||||
Sbjct: 220 tacattgttttgtgtttaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 600
Length adjustment: 8
Effective length of query: 191
Effective length of database: 592
Effective search space:   113072
Effective search space used:   113072
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)