BAC Information

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BAC

Clone NameMSMg01-096D08
Chromosome18 (Build37)
Map Location 14,803,208 - 14,803,527
singlet/doubletsinglet
Overlap geneSs18
Upstream geneLOC100040358, Zfp521, LOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867
Downstream geneLOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473, Chst9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096D08.T7 (MSMg01no096_d08.b1)MSMg01-096D08.TJ (MSMg01no096_d08.g1)
ACCAG312939AG312940
length826822
length of high quality
(start - end)
324 (104 - 427)236 (136 - 371)
definitionCHROMAT_FILE: MSMg01no096_d08.b1 PHD_FILE: MSMg01no096_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:29 2005CHROMAT_FILE: MSMg01no096_d08.g1 PHD_FILE: MSMg01no096_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTTNTTTTTTTTTTTCTTCTCCCTCCCCCCCTCCC
CCNCCCCACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAAAACCTTTGCATTGGGTGGTACAGTGACAATATGT
TGTGAAGAACCCTGTCTAAGTAGACAGTCTTGGGGATGGGCGACATCAGA
ATGCCTCGCTTGGGGTCAGGAGTCCAGCGCAGCTGCTACACTGTTTGCCT
AGTATTCACAACGCACCAGTGTGGATCCCAGCATTACAGACACCTGGCTT
GATGATGCGCGCACGCCTATAGCCCCAGCACTCAGGCAGTGTAGGCACAA
GGCTCAGGAATTGAAGGTCACCTTCAGCAACCTACCAAGCTGGAGCTCCA
CCTGGACTGCAAAGCAAGGGGTGGGGGGTGGGGGGCCTCATATTTATTTC
TTCACTCCTCTATCTCCTTTTTCTCTCCCCCTCTTCCCTCTATCTTCTCT
CTTTCTCCTCTCCCCTTGCCTTTCCCCCTCCTCTCTCCCCTGCTTTTCTT
TTTTTCCTCTTCTCACTCATTTACTCCTTTCCCTCTTTTTTCCTCTTTCC
GTTCTTTCTCCGCCTCCCCTCCCCTCCGTTTTCCCCCCGCTCATTTCCTT
TTTCTCCCACCTCCATCTTCCTTCCTTCTCTTCTTCTTCCCTTTTTCTTT
TCTCTTCCCCTCCCCTTCCTCCTGTGTCCTTTATCTTCCTCCTCTTCTTT
TACTCTCCTTCATCCCCTCTTCTTTTTCTCTATCTTTTTTTCTCCCCATC
TCCCACCGTTCCCTCCCTCTCCTTTC
TTTTTTTTTTTTTTTTTTTCTTTTTTTTCTCTCTTCCCTCCTCCTCTTTC
ACACACCCAGCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCCAGCAAGCAC
ACCAAACAGCTCCAGATCTGACAACCTGTCCACTGTGGGCACCAGAACTC
ATGTGCACATGCCCACACAGAGACACATACATGTAATAAAAAAAAATAAT
AAAATAGAACAAATAAAATAATCACCAAAGCTTAATGTCCACCAAAATTT
AAAAACAAACAAAAATATACTTGTACAAGTGTTCTGAGAGAATCCCTTTG
CCTCTCCTGTCATACAATGTAAGTTTATAATAAAAAGATGACAGTCTACG
AAGCCACCCTTATCAGACACCAAATCTGTCTTCTCTTTTTTTTTTCCTGG
ACTTCCCAGACTTCCTATTACATGCTGCATAGCCCCCTATCACACTTATT
TATCGCCCCCTGCTGCCACACCCCTCCCTATCACTCTTGACTTAACCCAC
GCGTTTTTTTCCTATCTCCACCACCTCCATTTCCCTCTCCCCCCTTTCTT
ATCCTCACCACAATTGCCCCTCCCCCTCCCACATCCTTACCCCCCTCTCT
TTCTCTCTTTTTACCCTCCCCCTCCTCCTCTTCCTTCTTCTTCCTCCCCT
CTTTCCTCCCCCCCCCCCTCCCTTTCTTTTTTTCTTTTCTTCCTTCACTC
TCTTTCTCTTCCTCCCCTCCCCTCGTCCTCTTCCCTTTTTCCTCCCCTCT
CCCTCTTCCTTCCCTTCCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_d08.b1 MSMg01no096_d08.b1 CHROMAT_FILE:
MSMg01no096_d08.b1 PHD_FILE: MSMg01no096_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:29 2005
         (324 letters)



>mm_chr18_14803004_14803727
          Length = 724

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaacctttgcattgggtggtacagtgacaatatgttgtgaagaaccctgtct 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaacctctggattgggtggtacagtgacaatatgttgtgaagaaccctgtct 264

                                                                       
Query: 65  aagtagacagtcttggggatgggcgacatcagaatgcctcgcttggggtcaggagtccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtagacagtcttggggatgggcgacatcagaatgcctcgcttggggtcaggagtccag 324

                                                                       
Query: 125 cgcagctgctacactgtttgcctagtattcacaacgcaccagtgtggatcccagcattac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgcagctgctacactgtttgcctagtattcacaacgcaccagtgtggatcccagcattac 384

                                                                       
Query: 185 agacacctggcttgatgatgcgcgcacgcctatagccccagcactcaggcagtgtaggca 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcacctggcttgatgatgcgcgcacgcctatagccccagcactcaggcagtgtaggca 444

                                                                       
Query: 245 caaggctcaggaattgaaggtcaccttcagcaacctaccaagctggagctccacctggac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaggctcaggaattgaaggtcaccttcagcaacctaccaagctggagctccacctggac 504

                               
Query: 305 tgcaaagcaaggggtggggg 324
           ||||||||||||||||||||
Sbjct: 505 tgcaaagcaaggggtggggg 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)