BAC Information

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BAC

Clone NameMSMg01-096K24
Chromosome18 (Build37)
Map Location 89,491,083 - 89,491,564
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096K24.T7 (MSMg01no096_k24.b1)MSMg01-096K24.TJ (MSMg01no096_k24.g1)
ACCAG313306AG313307
length693785
length of high quality
(start - end)
488 (49 - 536)127 (249 - 375)
definitionCHROMAT_FILE: MSMg01no096_k24.b1 PHD_FILE: MSMg01no096_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:08 2005CHROMAT_FILE: MSMg01no096_k24.g1 PHD_FILE: MSMg01no096_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACTATTGTTCCAGAATCCGCGGAATTCTCCTTGACTTTCTCTAATGAT
GAACAGTGATGTAGAAGCTTAAGCCAAATAAACCCTTTTCTCCTAAAGTT
GCTCTTGTTTGTGGTGTTTCACTGAAGCACAACAATAGAACAGTAACTAA
GTAACTGACAATCTTGGTTTGGTCCTTTGAACATTGATGATGAAAGGAGA
AAACCTCCACAAATTTCATCCTTTGACTTAAATGAACATTCTGTGCTCTC
TCTCTCTCTGTTTCTCACTCTCTCTCTTTTTTCTCTCACACACATACACA
CCCCTGCATATGCACACATACACATGAGTAAATGCATATATATGTATATG
TGTGTGTATGTATGTATGAACATAGTTTCTCCATCTTTTGGCTAACATTG
AATATAGAACATAATCATCTAGGAAGCCTGGCTTTCTAGCCTGAGTGAGA
AGCCACTCACACCTTCCTGTATTCTTTTAGCATCTGGTACAAACCTCATT
TTATCTTTTATTTCTCATGTAGCTTCTCCTTTAAGCTGGTGAAGAGGAAG
TTTATTTACCTTTGTGGCTTTTCAGCCTTCTAAAATGCCAGGCACATGGC
ACTCAATAAATATTAATGACTAAAACCATGAAAAATGCATGTGACAGTTC
TGTCTTGTGTGCACAGAACAATGGCACTTGCAGGGATTGAACG
CCCCCCCTTCTTNNTTTCCTTTACACTAACAACCACTCCCCCCCTCAATT
CCTCGATGAAGTGNGTAGCCTGGNGGNNGNTGCCCTTTCTTACTCGCNAA
NNANAGAAGGATTTTGCANCACCAAGGNNAAANGGAAGGAGANANNNGGA
NAAACNCCANANAAANAATATACGCCCGCNCCNAAAGANNAAGGCNAGNA
AAANCAAAGAACTTCCAATCNAGNCCANNCNNCAGAANAAGCNCACCNAA
CACTTTTCTTAAATCAGTATACTTGAACTTGATAACTTCTCAAGAACACT
AAATTTTATTACCATGGCAGAGACTTCCCCTCTCCTTTTTTTAAATATAC
CTCCTCAACACACTCAAAGCTTTTTTTTTTTATGAAAGAGCACNGCAAGG
CNCAGAGCGANNCCTATTTTCCCCTCAAAATAATATAAAGTTATGTGTGA
AAACTAGGCAAAAGTACAAAATGGAGGTGAAAATAAAACCCTCTAAGAAA
TAAAAATATATATACTAAAAACCAGAAAAATGACAGTGGTAATTGTTTTA
TTTTGTTATTGTTGTTTTGTTTTTGTTTTGCCTTTTTACGTTTCAAACTA
CGTCCTGTGATATTCACATTTAAATGCTTATGCATCTTCATATGCTTTAC
AATACTTTACAAACACTTTACAGGACTTAGTAACCACCGAAATTCCTAGC
AATGGATGCCCCCATACATTTTTTTTGTTTACTAACTGAATGTAGCTACT
TTTTACCCCCCTTAAGCTTACGTGATTCGCGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_k24.b1 MSMg01no096_k24.b1 CHROMAT_FILE:
MSMg01no096_k24.b1 PHD_FILE: MSMg01no096_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:08 2005
         (488 letters)



>mm_chr18_89490877_89491764
          Length = 888

 Score =  862 bits (446), Expect = 0.0
 Identities = 475/488 (97%), Gaps = 6/488 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaacagtgatgtagaagcttaagccaaataaacccttttctcctaaagttgctcttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atgaacagtgatgtagaagcttaagccaaataaacccttttctcctaaagttgctcttgt 266

                                                                       
Query: 61  ttgtggtgtttcactgaagcacaacaatagaacagtaactaagtaactgacaatcttggt 120
           |||||||||||||||||||||||||||||||||      |||||||||||||||||||||
Sbjct: 267 ttgtggtgtttcactgaagcacaacaatagaac------taagtaactgacaatcttggt 320

                                                                       
Query: 121 ttggtcctttgaacattgatgatgaaaggagaaaacctccacaaatttcatcctttgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ttggtcctttgaacattgatgatgaaaggagaaaacctccacaaatttcatcctttgacc 380

                                                                       
Query: 181 taaatgaacattctgtgctctctctctctctgtttctcactctctctcttttttctctca 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 taaatgaacattctgtgctctctctctctctgtttctctctctctctcttttttctctca 440

                                                                       
Query: 241 cacacatacacacccctgcatatgcacacatacacatgagtaaatgcatatatatgtata 300
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 cacacatacacacccatgcatatgcacacatacatatgagtaaatgcatatatatgtata 500

                                                                       
Query: 301 tgtgtgtgtatgtatgtatgaacatagtttctccatcttttggctaacattgaatataga 360
           ||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 tgtttgtgtatatatgtatgaacatagtttctccatcttttggctaagattgaatataga 560

                                                                       
Query: 361 acataatcatctaggaagcctggctttctagcctgagtgagaagccactcacaccttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acataatcatctaggaagcctggctttctagcctgagtgagaagccactcacaccttcct 620

                                                                       
Query: 421 gtattcttttagcatctggtacaaacctcattttatcttttatttctcatgtagcttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtattcttttagcatctggtacaaacctcattttatcttttatttctcatgtagcttctc 680

                   
Query: 481 ctttaagc 488
           ||||||||
Sbjct: 681 ctttaagc 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)