BAC Information

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BAC

Clone NameMSMg01-097A14
Chromosome18 (Build37)
Map Location 61,070,996 - 61,071,234
singlet/doubletsinglet
Overlap genenone
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699
Downstream geneArsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097A14.T7 (MSMg01no097_a14.b1)MSMg01-097A14.TJ (MSMg01no097_a14.g1)
ACCAG313570AG313571
length748759
length of high quality
(start - end)
237 (182 - 418)239 (136 - 374)
definitionCHROMAT_FILE: MSMg01no097_a14.b1 PHD_FILE: MSMg01no097_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:37 2005CHROMAT_FILE: MSMg01no097_a14.g1 PHD_FILE: MSMg01no097_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCCNNNAAAANNNNNNNNNNNNNNNNNNNTTTCCCCCNNAAAACAAAN
NNNNAAAACTATAATTGCGGCGCTAAACGACTCACTATTCCGAGAGGACC
GCGGAATTCAATTCTTTCCCCCACATGATGGCTCACAACAATCAGTAGAG
CTACAGTGTACTCATATACATATACCCTAATAAATAAATCTTTTTTTAAA
AAAAAGTTAGGCGTGGAGCTGAGCATGGTGACGGATGCCATCCCTGTCAA
CAGTGAGACAGGACGATCAGAAGCCCAAAGCCAGCTTCTGCTTCACAGTG
AATTCAAGGTCATCCTAGACTAAATTAGACCCACTATCTACCCCAGATAT
CAGGGAGAGGGAAAGTGCTTGTCTATTCTTACACAAACCCTGGGTTCATT
CAGTTCCCAACACTTATTATTCACCCGCCGTCGCCATAAGCCTCTCTCTC
TCATCTGGGCGGAAGGAAGGGAAGGATGGTCAGAAATTCAAGATCATCCT
TAGCTATAGAGCAAGCTTGAGGGCAAAGGCGGGCTACCTGAAACCCTGCC
TCCCACCACCACAAAAAATAAAAAAAAAAAGGGTTATACTCATAATCCCA
ACACTTAAAAAGCTGAGGCAGGAGGATCACTGAAAGCTCCAGGCCAGCAA
CATTATAGGTCAACCAGCAGTGCTGCATAGATACCCTTATTACCAAAAAT
TCTTATCATACCCATGCCACCCAAACTCGGTCCGCAGCTAAAATGCCC
NNNCCCCNNNNNNNNNNNNTTTTTCCTTTNTNCCCCCCNNNNNNNCGGGC
CCCCNNCCTCGCATGTAGTGGTAGGCCTGGNGGACGCCTGGTTCACCACC
CGGGGNGAACTATAGAACGTCCCGCAACAACTCAGTGGAACAATTCCGGA
ATAGTTCGGCCAGGCATTCCTAGATCATGGAGTCTTAGCATATGAATGCC
AGCCCTAGAAAAGTCCACTTCATTTTCCGAGCCAACTGGGTCATTTCTAG
AGATGGAGAGACCAAGGTCCTGGGATGACCAGGAACTAGCTCTGCTAAAT
CACAGAGCCAATGGACTGTTGGAACGGCAGCTTCCTCCTGACTCTGCCAG
CTTCTCTTCCTTCCACATCTTACCTTCTTTTTTCCACTTCTTAGCTGGTT
ATAAGGTGTTAAGAGTGTTTGTTTGTTCTACATGCCAAAAGTGTTGTATA
CATCTTACATCCCCAGGATCCCTCCCGGGTTAAGAACAGCTTACCACTGC
CCGCTCTCCACCCTGTTGCTCGAATGACTGCAATGGATGAGTAAGTCAAT
GGGCTCTTGCACCCACCTCGGCGACAACTCCCCCTCCCGAAAATACCCAG
GAACATCTCAGCCAAACGTTCCGGCGACACAGGCGCCGGTTCTTCCCCTT
GTTCCGTGTTTTCTCACCTATTTAAGCCCCGGCGCGCACCACACCACAAC
CTACCCGGAGGACCCCATCTTGTTCATTTAGTGCCCCCTGCCCATCTCCC
GACCCCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_a14.g1 MSMg01no097_a14.g1 CHROMAT_FILE:
MSMg01no097_a14.g1 PHD_FILE: MSMg01no097_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:38 2005
         (239 letters)



>mm_chr18_61070796_61071434
          Length = 639

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaacaattccggaatagttcggccaggcattcctagatcatggagtcttagcatatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 439 tggaacaattccggaatagttcggccaggcattcctagatcatggagtcttagtatatga 380

                                                                       
Query: 61  atgccagccctagaaaagtccacttcattttccgagccaactgggtcatttctagagatg 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 379 atgccagccctagaaaagtccagttcattttccgagccaactgggtcatttctagagatg 320

                                                                       
Query: 121 gagagaccaaggtcctgggatgaccaggaactagctctgctaaatcacagagccaatgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gagagaccaaggtcctgggatgaccaggaactagctctgctaaatcacagagccaatgga 260

                                                                      
Query: 181 ctgttggaacggcagcttcctcctgactctgccagcttctcttccttccacatcttacc 239
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgctggaacggcagcttcctcctgactctgccagcttctcttccttccacatcttacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)