BAC Information

Click to search

BAC

Clone NameMSMg01-097D01
Chromosome18 (Build37)
Map Location 84,714,910 - 84,715,363
singlet/doubletsinglet
Overlap geneZfp407
Upstream geneTshz1, Zadh2, LOC669856
Downstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097D01.T7 (MSMg01no097_d01.b1)MSMg01-097D01.TJ (MSMg01no097_d01.g1)
ACCAG313686AG313687
length682759
length of high quality
(start - end)
---454 (134 - 587)
definitionCHROMAT_FILE: MSMg01no097_d01.b1 PHD_FILE: MSMg01no097_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:50 2005CHROMAT_FILE: MSMg01no097_d01.g1 PHD_FILE: MSMg01no097_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTATACGACTCCTATTTCGAGAGGACCGCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CAAAAGAGGGAGGTATGGAAGACCCTTCTACATCAAACTTCTCCGCTCTC
TGGNNNNAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGAAAGTCCTCCTG
TGTGTGGCTGTGGAAGGAAGGACATAGTCCACAGCTGTCTGCTGAGCACT
AGCGTTTACCAGTGCTTGCTGGAGTTCAGCTTGAATTAACATCTTCCTCA
AATACTCAAAACTCGGCTCATCGTGGCTAACTCAGAAATTGCTTCTGCAG
CAGGTAGTAGTGGATATGATCGCCACTGGTAGTGAGGCAGATGAACCAGG
GCTACCTGTCCAGACAGGGGCTGTGGTACATGTATGTCGACAAGAGGTGG
CTATTTGCAGGTGGGGAAACTAAATCAACACTGCCTGAAGCATGATTATA
AAGCCAGGAAGACAATCGCAGGGATGGGTGTTTCTCAGAGCTGTTTCATG
CTCTCATGTTGACTGTTAGCTCTTTGCCTGCCTGCCAGTCTTCCCTCCGA
CCCCTTGCTCCCCCTCCCTCCATTGCCCCCCTCCCCCTGCTCTCCTAAGA
ACCTATATGACTTGCCCGTTTCTGGAACGATAATGACCAACACCACGCAG
TGTGTCTTAATAGGTAGGTGGGAAGTAAATTACTGTTCACAGTCCCGGTG
TGTGCGAATTGGTCTAATAGTCTTTTTAGAAAACCCCCCTACTTTATAAA
TTTAACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_d01.g1 MSMg01no097_d01.g1 CHROMAT_FILE:
MSMg01no097_d01.g1 PHD_FILE: MSMg01no097_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:51 2005
         (454 letters)



>mm_chr18_84714710_84715563
          Length = 854

 Score =  847 bits (438), Expect = 0.0
 Identities = 450/454 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagaaagtcctcctgtgtgtggctgtggaaggaaggacatagtccacagctgtctgct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 654 tgcagaaagtcctcctgtgtgtggctgtggaaggaaggacatagtccacagctgcctgct 595

                                                                       
Query: 61  gagcactagcgtttaccagtgcttgctggagttcagcttgaattaacatcttcctcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gagcactagcgtttaccagtgcttgctggagttcagcttgaattaacatcttcctcaaat 535

                                                                       
Query: 121 actcaaaactcggctcatcgtggctaactcagaaattgcttctgcagcaggtagtagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 actcaaaactcggctcatcgtggctaactcagaaattgcttctgcagcaggtagtagtgg 475

                                                                       
Query: 181 atatgatcgccactggtagtgaggcagatgaaccagggctacctgtccagacaggggctg 240
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 474 atgtgatcgccactggtagtgaggcagatgaaccagggctacctgtccagaccggggctg 415

                                                                       
Query: 241 tggtacatgtatgtcgacaagaggtggctatttgcaggtggggaaactaaatcaacactg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tggcacatgtatgtcgacaagaggtggctatttgcaggtggggaaactaaatcaacactg 355

                                                                       
Query: 301 cctgaagcatgattataaagccaggaagacaatcgcagggatgggtgtttctcagagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cctgaagcatgattataaagccaggaagacaatcgcagggatgggtgtttctcagagctg 295

                                                                       
Query: 361 tttcatgctctcatgttgactgttagctctttgcctgcctgccagtcttccctccgaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tttcatgctctcatgttgactgttagctctttgcctgcctgccagtcttccctccgaccc 235

                                             
Query: 421 cttgctccccctccctccattgcccccctccccc 454
           ||||||||||||||||||||||||||||||||||
Sbjct: 234 cttgctccccctccctccattgcccccctccccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)