Query= MSMg01no098_d17.b1 MSMg01no098_d17.b1 CHROMAT_FILE:
MSMg01no098_d17.b1 PHD_FILE: MSMg01no098_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:16 2005
(293 letters)
>mm_chr18_81372350_81373047
Length = 698
Score = 501 bits (259), Expect = e-146
Identities = 284/295 (96%), Gaps = 7/295 (2%)
Strand = Plus / Minus
Query: 5 gaattctgtgac-cccacaattgccttgatatcaatatgttttttcatgaattgcaaaga 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaattctgtgacagcaacaattgccttgatatcaatatgttttttcatgaattgcaaaga 439
Query: 64 aaagcaggtgtataaaaataaaacccacataaaatataaattatcatcgtgcaagttaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaagcaggtgtataaaaataaaacccacataaaatataaattatcatcgtgcaagttaat 379
Query: 124 ttcctaccctcaggatacaatcgctctcgcactttatatttg-----aaaaaaaatgttt 178
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 378 ttcctaccctcaggatacaatcgctctcgcactttatatttgcaaaaaaaaaaaatgttt 319
Query: 179 gtgagttactttttgaggtttatttatttatttctatttgtttatcattcctttgcctga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtgagttactttttgaggtttatttatttatttctatttgtttatcattcctttgcctga 259
Query: 239 ctgagaggtaggtctctgagatacaataccatttccatattctgctcctggggac 293
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 258 ctgagaggtaggtctctaagatacaataccatttccataa-ctgctcctggggac 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 698
Length adjustment: 9
Effective length of query: 284
Effective length of database: 689
Effective search space: 195676
Effective search space used: 195676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no098_d17.g1 MSMg01no098_d17.g1 CHROMAT_FILE:
MSMg01no098_d17.g1 PHD_FILE: MSMg01no098_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:16 2005
(555 letters)
>mm_chr18_81308849_81309803
Length = 955
Score = 1029 bits (532), Expect = 0.0
Identities = 550/556 (98%), Gaps = 2/556 (0%)
Strand = Plus / Plus
Query: 1 catacctctttctgacttacttctttctgttcctgcctcctccgttgcacaggtggctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 catacctctttctgacttacttctttctgttcctgcctcctccgttgcacaggtgactga 260
Query: 61 tctgctcctgcttcctctgttacatgcgttgttggtgcaccccacagtggggattgcctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgctcctgcttcctctgttacatgcgttgttggtgcaccccacagtggggattgcctg 320
Query: 121 agaggtgtcgctgtgtagtgtgatcagaaggacatgctgatagtaaggtgaattatcttc 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaggtgccgctgtgtagtgtgatcagaaggacatgctgatagtaaggtgaattatcttc 380
Query: 181 atccacggtggttgacacatcaaaga-caatggtgtaactggatggataggtggagagat 239
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 381 atccacggtggttgacacatcaaa-atcaatggtgtaactggatggataggtggagagat 439
Query: 240 tcagcttgtttcactgagtagatgacacaaaactgtctggccagaggtgtgtcccatact 299
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcagcttgtttcactgagtaaatgacacaaaactgtctggccagaggtgtgtcccatact 499
Query: 300 aacatctgagaagagtctcttgtgtggagggtgaggatggaatgacagggttaggggagc 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 500 aacatctgagaagagtctcttgtgtggagggtgaggatggaataacagggttaggggagc 559
Query: 360 aaggggtgggcaggcagatacagtttctcaggctgaagaacacttgtgatattatcttta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaggggtgggcaggcagatacagtttctcaggctgaagaacacttgtgatattatcttta 619
Query: 420 gggtcctgtaacatcagatcactgtaaaaaaaatggaatggaagactttgtttttgaaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggtcctgtaacatcagatcactgtaaaaaaaatggaatggaagactttgtttttgaaga 679
Query: 480 atttacctcaaagccacatgtagatggcaggtcttgatggccacagaggtggctgtcctc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttacctcaaagccacatgtagatggcaggtcttgatggccacagaggtggctgtcctc 739
Query: 540 atacacataccctaga 555
||||||||||||||||
Sbjct: 740 atacacataccctaga 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
